SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62124

Length: 417 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene62124
GATAAATGTTGACGTCGTGACCTTGGCTGTCACTAAAATGCTGGGTCCTCTTTGATGGGGATAGGCACTGCAACAGGTAAATCAAGGGCTCGTGATGCTGCACTAAATGCCATTCAATCACCCCTATTGGATATGGGTATTGATCAAGCAAGTGGGATAGTGTGGAATATCACTGGGGGAGATGATCTTACCTTGTTTGAGGTGTTCTTTTGTTTTGTCTCATCATTGTTAATTCATCCACTTCTAGTTTGAACTTTAATATTTTGGTCCTTTCTTTGAATTATCTAGGTGCAATACATTGGTAATACATTTAAGTAGTTTATACCACTTAGAGTCTTGTCTCATACATCATACTATTTCTAAGAAGGCACATAGAAGTTAAGTGCAGTTAATGTTAATTGTAGAAATTGGGGTAAC

Ace file of the UniGene sp_v1.1_unigene62124 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast division protein AtFtsZ2-1 n=2 Tax=Arabidopsis RepID=O82533_ARATH	-	-	3.0e-21	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	plastid division protein	-	-	5.12546e-21	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast fission	GO:0010020	Biological Process	5.12546e-21	97%
Blast2go	identical protein binding	GO:0042802	Molecular Function	5.12546e-21	97%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	5.12546e-21	97%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tubulin/FtsZ, C-terminal	IPR008280	-	5.12546e-21	97%
Blast2go	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	5.12546e-21	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP13

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 26 aas, your sequence is shorter than subject: 84 - 572

Fln protein: DKC*RRDLGCH*NAGSSLMGIGTATGKSRARDAALNAIQSPLLDMGIDQASGIVWNITGGDDLTLFEVFFCFVSSLLIHPLLV*

Protein Length: 85

Fln nts: GATAAATGTTGACGTCGTGACCTTGGCTGTCACTAAAATGCTGGGTCCTCTTTGATGGGGATAGGCACTGCAACAGGTAAATCAAGGGCTCGTGATGCTGCACTAAATGCCATTCAATCACCCCTATTGGATATGGGTATTGATCAAGCAAGTGGGATAGTGTGGAATATCACTGGGGGAGATGATCTTACCTTGTTTGAGGTGTTCTTTTGTTTTGTCTCATCATTGTTAATTCATCCACTTCTAGTTTGAACTTTAATATTTTGGTCCTTTCTTTGAATTATCTAGGTGCAATACATTGGTAATACATTTAAGTAGTTTATACCACTTAGAGTCTTGTCTCATACATCATACTATTTCTAAGAAGGCACATAGAAGTTAAGTGCAGTTAATGTTAATTGTAGAAATTGGGGTAAC

Fln Alignment:

sp_v1.1_unigene62124___NAGSSLMGIGTATGKSRARDAALNAIQSPLLDMGIDQASGIVWNITGGDDLTLFEV
B8LP13_______________NAGSSLMGIGTATGKTRARDAALNAIQSPLLDVGIERATGIVWNITGGSDLTLFEV

SNPs (tot: 4)

Position	A %	C %	G %	Probability
399		33	66	0.997471
400	33		66	0.997471
406	33		66	0.997476
408	33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain