SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62061

Length: 269 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene62061
CGTCGTGACCTTGGCTGTCACTCAAAGGTTCTACTACTTGCATGCCACGGATCTATGGCTAGTTCAGAGCAGAAATTAATTTTTGAAAATCCACCACCAGATGTTCGAAAGATAGTTCTTGCTACAAATATGGCAGAGACAAGTATAACCATCAATGATGTTGTATTTGTGGTGGACTGTGGGAAGGCGAAGGAAACTTCCTATGATGCACTGAACAACACTCCTTGTCTGCTTCCTACTTGGATATCAAAAGCTTCTGCTCGGCAAAG

Ace file of the UniGene sp_v1.1_unigene62061

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Fructose-bisphosphate aldolase n=1 Tax=Oryza sativa Japonica Group RepID=B9EZ83_ORYSJ	-	-	2.0e-37	91%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	41%
Blast2go	helicase domain-containing protein	-	-	3.85217e-37	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	3.85217e-37	94%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	3.85217e-37	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	3.85217e-37	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38953

Fln msg: Distance to subject end: 331 aas, your sequence is shorter than subject: 89 - 1168

Fln protein: RRDLGCHSKVLLLACHGSMASSEQKLIFENPPPDVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQ

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGTTCTACTACTTGCATGCCACGGATCTATGGCTAGTTCAGAGCAGAAATTAATTTTTGAAAATCCACCACCAGATGTTCGAAAGATAGTTCTTGCTACAAATATGGCAGAGACAAGTATAACCATCAATGATGTTGTATTTGTGGTGGACTGTGGGAAGGCGAAGGAAACTTCCTATGATGCACTGAACAACACTCCTTGTCTGCTTCCTACTTGGATATCAAAAGCTTCTGCTCGGCAAAG

Fln Alignment:

sp_v1.1_unigene62061___KVLLLACHGSMASSEQKLIFENPPPDVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQ
Q38953_______________ELIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain