SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene62027

Length: 406 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene62027
CATGGGGATCTGAGCATTTGAACGTGGTTTTGATTGGAGGGATATCATCTCTGTTTGTCCTTGTGAGTGAGCTAGGTGTGAAACATGGCTGGGAATGGGGTGGTGAAGGCTGTGTTTGTGTTTGGGGTTGTGGCGACATTGATGACTGCGTGGGGTGTAGTCACAAAGGAGGGTGCGATATCATGCAACAATGTCGCGAGTGCCTTCACTCCATGCGCTGGATACCTCACGGGGAATGCGACACCCCTGGATATCTGGTTGTTGTCCTTCCCTCAAGGGGTTAAACTCTCAAGTGAGAGGGACACCCCTGATAGGCAGGCTCTTTGTAACTGCCTCAAGGATCAGGCAAAGACACTTGGGTTTAGTTTAGAGTTCATTGAAAGGAGTTCTGCCGGTGATCGAATCT

Ace file of the UniGene sp_v1.1_unigene62027

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=4 Tax=Picea sitchensis RepID=A9NJW4_PICSI	-	-	2.0e-15	57%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	nltp_pinta ame: full=non-specific lipid-transfer protein short=ltp flags: precursor	-	-	1.42186e-15	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/Par allergen	IPR000528	-	1.42186e-15	63%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	1.42186e-15	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NJW5

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 107 - 123

Fln protein: MAGNGVVKAVFVFGVVATLMTAWGVVTKEGAISCNNVASAFTPCAGYLTGNATPLDIWLLSFPQGVKLSSERDTPDRQALCNCLKDQAKTLGFSLEFIERSSAGDRI

Protein Length: 108

Fln nts: CATGGGGATCTGAGCATTTGAACGTGGTTTTGATTGGAGGGATATCATCTCTGTTTGTCCTTGTGAGTGAGCTAGGTGTGAAAC_-_ATGGCTGGGAATGGGGTGGTGAAGGCTGTGTTTGTGTTTGGGGTTGTGGCGACATTGATGACTGCGTGGGGTGTAGTCACAAAGGAGGGTGCGATATCATGCAACAATGTCGCGAGTGCCTTCACTCCATGCGCTGGATACCTCACGGGGAATGCGACACCCCTGGATATCTGGTTGTTGTCCTTCCCTCAAGGGGTTAAACTCTCAAGTGAGAGGGACACCCCTGATAGGCAGGCTCTTTGTAACTGCCTCAAGGATCAGGCAAAGACACTTGGGTTTAGTTTAGAGTTCATTGAAAGGAGTTCTGCCGGTGATCGAATCT

Fln Alignment:

sp_v1.1_unigene62027___TLMTAWGVVTKEGAISCNNVASAFTPCAGYLTGNATPLDIWLLSFPQGVKLSSERDTPDRQALCNCLKDQAKTLGFSL
A9NJW5_______________TVMTAWGVVRTEGAISCNQVVSALTPCAGYLIGNAATPAPACCPAIKGLD-SQVKATPDRQAVCNCLKNQATSFGVKL

SNPs (tot: 3)

Position	A %	G %	T %	Probability
32	33		66	0.997456
36		33	66	0.997453
39		66	33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain