SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61953

Length: 486 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene61953
CAAATTTTCTTGCTTGGAAGTGGAATCGCGATCACTCATAATTGCTACATTCCAGGATTGCACTACACTTCTTCCACGTTTACTGCGGCAGCATTTAATCTTGTTCCCGTTTTAACTTTTGTAATAGCCACAGTTCGAAGACAGGAGAAAGTGAATCTCAGAAGTTTAAGAGGACAAGCAAAAGTTGTGGGCACAGTTATAAGCGTTACTGGTGCAATGGTCATGACCTTATACAGGGGACCCGAGCTTCATTTTTTATCGCCTGGTGCGAAAAGCCATCAAATCACTTACAAGTCTAAGCCTAATATTGTACTAGGTTCCATCCTGGTTTTTGTGGCCGTTGTGGTTTGGTCTGCCTATATTGCTTTTCAGTAGAATCAGCTCTACTTGGTATTATCTTCGCGAGTAAGAAGTCGAACGTATGGTCTATACGATGGAATATTGATCTTCTTAGTATTATATATGCGGGCATGGTAGGTTCCTCAG

Ace file of the UniGene sp_v1.1_unigene61953

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MtN21 protein n=1 Tax=Medicago truncatula RepID=O24091_MEDTR	-	-	3.0e-25	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	auxin-induced protein	-	-	2.39913e-31	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Drug/metabolite transporter	IPR000620	-	2.39913e-31	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABM1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 131 aas, your sequence is shorter than subject: 125 - 371

Fln protein: QIFLLGSGIAITHNCYIPGLHYTSSTFTAAAFNLVPVLTFVIATVRRQEKVNLRSLRGQAKVVGTVISVTGAMVMTLYRGPELHFLSPGAKSHQITYKSKPNIVLGSILVFVAVVVWSAYIAFQ*

Protein Length: 126

Fln nts: CAAATTTTCTTGCTTGGAAGTGGAATCGCGATCACTCATAATTGCTACATTCCAGGATTGCACTACACTTCTTCCACGTTTACTGCGGCAGCATTTAATCTTGTTCCCGTTTTAACTTTTGTAATAGCCACAGTTCGAAGACAGGAGAAAGTGAATCTCAGAAGTTTAAGAGGACAAGCAAAAGTTGTGGGCACAGTTATAAGCGTTACTGGTGCAATGGTCATGACCTTATACAGGGGACCCGAGCTTCATTTTTTATCGCCTGGTGCGAAAAGCCATCAAATCACTTACAAGTCTAAGCCTAATATTGTACTAGGTTCCATCCTGGTTTTTGTGGCCGTTGTGGTTTGGTCTGCCTATATTGCTTTTCAGTAGAATCAGCTCTACTTGGTATTATCTTCGCGAGTAAGAAGTCGAACGTATGGTCTATACGATGGAATATTGATCTTCTTAGTATTATATATGCGGGCATGGTAGGTTCCTCAG

Fln Alignment:

sp_v1.1_unigene61953___QIFLLG-SGIAITHNCYIPGLHYTSSTFTAAAFNLVPVLTFVIATVRRQEKVNLRSLRGQAKVVGTVISVTGAMVMTLYRGPELHFLSPGAKSHQITYKSKPNIVLGSILVFVAVVVWSAYIAFQ
D5ABM1_______________QIFLLALCGITVNQNLYFAGLYYTNSTFASATTNLIPVVTFVMATVLRYEKVEIRKMRGKAKVVGTTICVGGAMVITLYKGPVIKLLTAYNSTANYNNILGSKRVLGCILLFASVFTWSSWITFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain