SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61948

Length: 544 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene61948
CAGCTTCTGGCGGACTCGGAAGAACAAATCCAAAAACGAAGTTGGAGGTGCCTCGGGGATTTAGACATAACCTCTTCCATGTCACAAGCTACCAGTCACACATTACCTGCAAGACATGGATAGTAGGCAGATGGCTCAGGCGAGAAGATCAGATGAAGGCACCAGAGGGCACTCGTTTATTCCGCTTCTTCCTTTTCCAATACCAAATATTCGTAACGACTGCACTTACGAGACCGTCCCTGCACTGAGTGTGCCCAAGAATCTTGAGAATCTGCATGCCTGTGAGAACGGGTTGCCTAGAAGAGTGCTCAGCGCATGGCGTGTTGGGGAATTGTGCATGCACTAGAAGATTGGAATCATCATGAATGTGATGATATCATTGACAGGGACAGCGTTGCTCGAGTATGGGAAGCTGCAATCAAACATGGCTTTCATCCTTTCAATTCGATCAAAGCCAATTAATGATGCTTCCGTAGATGCAGAGTCCGAATAAATTCCTCAGACTGTTTTTACAGAAATAATTGTTGCTAGTAAGCACCGACAA

Ace file of the UniGene sp_v1.1_unigene61948

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Wax2_C domain containing protein	-	-	2.0e-18	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	cer1 expressed	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	78%
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	78%
Blast2go	anther development	GO:0048653	Biological Process	78%
Blast2go	exine	GO:0043668	Cellular Component	78%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised domain Wax2, C-terminal	IPR021940	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD47

Fln msg: Separated hits, possible frame ERROR between 197 and 206, and overlapping frame ERROR between 328 and 316, your sequence is shorter than subject: 154 - 228

Fln protein: ASGGLGRTNPKTKLEVPRGFRHNLFHVTSYQSHITCKTWIVGRWLRREDQMKAPEGTRLFRFFLxxxxNIRNDCTYETVPALSVPKNLENLHACENGLPRRVLxxxxxxxIVHALEDWNHHECDDIIDRDSVARVWEAAIKHGFHPFNSIKAN*

Protein Length: 155

Fln nts: CAGCTTCTGGCGGACTCGGAAGAACAAATCCAAAAACGAAGTTGGAGGTGCCTCGGGGATTTAGACATAACCTCTTCCATGTCACAAGCTACCAGTCACACATTACCTGCAAGACATGGATAGTAGGCAGATGGCTCAGGCGAGAAGATCAGATGAAGGCACCAGAGGGCACTCGTTTATTCCGCTTCTTCCTTTTxxxxxxxxxAAATATTCGTAACGACTGCACTTACGAGACCGTCCCTGCACTGAGTGTGCCCAAGAATCTTGAGAATCTGCATGCCTGTGAGAACGGGTTGCCTAGAAGAGTGCTCAGxxxxxxxxxxxxxxxxxxAATTGTGCATGCACTAGAAGATTGGAATCATCATGAATGTGATGATATCATTGACAGGGACAGCGTTGCTCGAGTATGGGAAGCTGCAATCAAACATGGCTTTCATCCTTTCAATTCGATCAAAGCCAATTAATGATGCTTCCGTAGATGCAGAGTCCGAATAAATTCCTCAGACTGTTTTTACAGAAATAATTGTTGCTAGTAAGCACCGACAA

Fln Alignment:

sp_v1.1_unigene61948___KTKLEVPRGFRHNLFHVTSYQSHITCKTWIVGRWLRREDQMKAPEGTRLFRFFLFxxxNIRNDCTYETVPALSVPKNLENLHACENGLPRRVxxxxxxxGIVHALEDWNHHECDDIIDRDSVARVWEAAIKHGFHPFNSIKAN
D5AD47_______________KSKMGVPWEFTHNLFQVTSYQSCINCKTWIVGSWLTREDQMKAPKGTRFIPFLPFxxxNVREDCTYQTVPAMSVPKNLENLHACENGLPRRVxxxxxxxGIVHALEEWNHHECDDVIDSASVTRVWDAATKHGFLPFNSIKGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain