SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61935

Length: 394 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene61935
GTTGGAAGTCGAAGCAGCCACCAGTTACCGACCGCAGGGACAGCTATGTTGCTTGTTATATTTGCATCTTTTGTCTATCTGTGCGCTGCAGGTAGGATACTCATTCTCAAATTTAGTTGTTCCGAATGACTGTTTGAATGTTATTTTATGTAATTTTCTTTTGGTCAATGTTTTTGTTCTGAATTAATGCAATCTGCAGAGTCCCCTGTGGCTTACAAGACAATAAAAGTTGTGAACAATTGTGCATTTCCTGTGTGGCCTGCGATTGTGGGGTCATCTGACCTTCCTGTCCCTAAGATGAGAAAGCTGAAAGCAGCAGAGTCATTTTCTTGGAGGGCGGATCCGTTCTGGTCAGGATCCATTTGGGGAAGGACTGGTTGCGTGTTCAATTCCC

Ace file of the UniGene sp_v1.1_unigene61935

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein P21, putative n=1 Tax=Ricinus communis RepID=B9T3K3_RICCO	-	-	3.0e-06	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	unknown [Picea sitchensis]	-	-	3.42406e-33	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thaumatin, pathogenesis-related	IPR001938	-	3.42406e-33	64%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPE2

Fln msg: Distance to subject end: 158 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 131 - 254

Fln protein: VGSRSSHQLPTAGTAMLLVIFASFVYLCAAGRILILKFSCSE*LFECYFM*FSFGQCFCSELMQSAESPVAYKTIKVVNNCAFPVWPAIVGSSDLPVPKMRKLKAAESFSWRADPFWSGSIWGRTGCVFNS

Protein Length: 132

Fln nts: GTTGGAAGTCGAAGCAGCCACCAGTTACCGACCGCAGGGACAGCTATGTTGCTTGTTATATTTGCATCTTTTGTCTATCTGTGCGCTGCAGGTAGGATACTCATTCTCAAATTTAGTTGTTCCGAATGACTGTTTGAATGTTATTTTATGTAATTTTCTTTTGGTCAATGTTTTTGTTCTGAATTAATGCAATCTGCAGAGTCCCCTGTGGCTTACAAGACAATAAAAGTTGTGAACAATTGTGCATTTCCTGTGTGGCCTGCGATTGTGGGGTCATCTGACCTTCCTGTCCCTAAGATGAGAAAGCTGAAAGCAGCAGAGTCATTTTCTTGGAGGGCGGATCCGTTCTGGTCAGGATCCATTTGGGGAAGGACTGGTTGCGTGTTCAATTCCC

Fln Alignment:

sp_v1.1_unigene61935___GSRSSHQLPTAGTAMLLVIFASFVYLCAAGRILILKFSCSE*LFECYFM*FSFGQCFCSELMQSAESPVAYKTIKVVNNCAFPVWPAIVGSSDLPVPKMRKLKAAESFSWRADPFWSGSIWGRTGCVFNS
B8LPE2_______________GSRSSH--PTAGTAMFLVTFVCFLYLGAA------------------------------------ESPMAYKTIRVVNNCAFPVWPAIVGSTDLPPPQLRKLRAGESYSWKADPFWSGSVWGRTGCVFNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain