SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61897

Length: 545 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene61897
CAAATGCCTTATGGGAAGGAGGCAAAGCAAGTGCTGCTCAATCTGGTGGAGGGAAAATCTTTACGAGTACTCATCTATGAGCAGGATCGTTATGGTCGCACTGTGGCTGATGTTTACAGCAAAGGTGTTTTTGTTCAGGAAGTTCTTTTGAAAAGGATGTGCATGGCACTATACAGCATATGATCAACGTCCAGAGCTTGCCATGTGGGAGAAAGAGGCCCGTGCTGCCCGTGTTGGATTATGGGCATCATCCAATCCTGAAAAACCTTGGGAGTGGAGGAAAACCAAAGAGAAGGCGGTGGTTAGATGGCGTTATTGTGTTGTCTGTGACAGTGTTTCAACATCTCCAGGACTATCATGTTCAACTGCGCCGATCACCCCACCACAGACATGGCAAGCCCGAATGCTTGCACTTCAAGGAAGGGTAAACAATGAAGTGGAAGACTTCAGTTTTACCTTTAGTGAACTGCTGGAGCCCTTGAGGGCTTCTCTGTAACAATTCTGAAATTATTTGTATCTTGAATTCTTTGATAAGTTGTATTTTA

Ace file of the UniGene sp_v1.1_unigene61897 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CAN; CAN (CA-2+ DEPENDENT NUCLEASE); nuclease	-	-	5.0e-32	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	dnase 2	-	-	4.10538e-34	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	nuclease activity	GO:0004518	Molecular Function	4.10538e-34	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRF3

Fln msg: Overlapping hits, possible frame ERROR between 156 and 110, your sequence is shorter than subject: 166 - 336

Fln protein: QMPYGKEAKQVLLNLVEGKSLRVLIYEQDRYGRTVAxxxxxxxxxxxxxxxxxCAWHYTAYDQRPELAMWEKEARAARVGLWASSNPEKPWEWRKTKEKAVVRWRYCVVCDSVSTSPGLSCSTAPITPPQTWQARMLALQGRVNNEVEDFSFTFSELLEPLRASL*

Protein Length: 167

Fln nts: CAAATGCCTTATGGGAAGGAGGCAAAGCAAGTGCTGCTCAATCTGGTGGAGGGAAAATCTTTACGAGTACTCATCTATGAGCAGGATCGTTATGGTCGCACTGTGGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTGCATGGCACTATACAGCATATGATCAACGTCCAGAGCTTGCCATGTGGGAGAAAGAGGCCCGTGCTGCCCGTGTTGGATTATGGGCATCATCCAATCCTGAAAAACCTTGGGAGTGGAGGAAAACCAAAGAGAAGGCGGTGGTTAGATGGCGTTATTGTGTTGTCTGTGACAGTGTTTCAACATCTCCAGGACTATCATGTTCAACTGCGCCGATCACCCCACCACAGACATGGCAAGCCCGAATGCTTGCACTTCAAGGAAGGGTAAACAATGAAGTGGAAGACTTCAGTTTTACCTTTAGTGAACTGCTGGAGCCCTTGAGGGCTTCTCTGTAACAATTCTGAAATTATTTGTATCTTGAATTCTTTGATAAGTTGTATTTTA

Fln Alignment:

sp_v1.1_unigene61897___YGKEAKQVLLNLVEGKSLRVLIYEQDRYGRTVADxxxxxxxxxxxxxxxGCAWHYTAYDQRPELAMWEKEARAARVGLWASSNPEKPWEWRKTKEK
A9NRF3_______________YGEEAKQILLNLVKGKPLQILVYDKDQYGRLVGDxxxxxxxxxxxxxxxGSVWHYKKYDQRPELAMWEKEARAAHVGLWASSNPQKPWEWRKIRRE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
361		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain