SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61840

Length: 554 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene61840
GAATGGATTGAGATTGGATGAATGCAAGGCGTATTTACGAAAGCATGGACTGAGGATAACTGGCTCTAAATCAGTTTGTATACAGCGCATACATGAGCATATGAAGGTGAAAGATGGATGTGGTCAAAACTTGTATCCAAGGTCATCATTTGTCATCAATTGCAGGGGGGATGTCTGTACTGGTGATATTGTTTTATTCTCACAGAAGGTCTATGAAAAGTATGATCTAGCATCAAGGGGTGGAGCACAAACTCCTATTGGCAAGCGCACTATAGCAGGGAAAATAGTGAAGGATAGCTATGGTGCAGCCAAGCAGCAGCATACTTTTACTGTTGAAATCCTCTGGAGCACAGGTGTAAAAGCCTTGCCTCCACTGTATCCACTGCTTATCAAGGGACGCAACTTGTACCGTTTGCAAACTTATCGCCAGCCTTGGCCAAATGAAGCGGAAAGAGCAAAAGTTTTGGCAGAGAAGCATGCAAGGGGGGATGAAGCTAGAAGTACTAGAGCTACTGCAAAGGCACAACGTGGAAGCAAAGGTAATAAACATTCCC

Ace file of the UniGene sp_v1.1_unigene61840 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SAP domain-containing protein	-	-	61%
FL-Next	sp=Zinc finger CCCH domain-containing protein 62; Oryza sativa subsp. japonica (Rice).	-	-	56%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DNA-binding SAP	IPR003034	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q338N2

Fln msg: Distance to subject end: 387 aas, your sequence is shorter than subject: 184 - 702

Fln protein: NGLRLDECKAYLRKHGLRITGSKSVCIQRIHEHMKVKDGCGQNLYPRSSFVINCRGDVCTGDIVLFSQKVYEKYDLASRGGAQTPIGKRTIAGKIVKDSYGAAKQQHTFTVEILWSTGVKALPPLYPLLIKGRNLYRLQTYRQPWPNEAERAKVLAEKHARGDEARSTRATAKAQRGSKGNKHS

Protein Length: 185

Fln nts: GAATGGATTGAGATTGGATGAATGCAAGGCGTATTTACGAAAGCATGGACTGAGGATAACTGGCTCTAAATCAGTTTGTATACAGCGCATACATGAGCATATGAAGGTGAAAGATGGATGTGGTCAAAACTTGTATCCAAGGTCATCATTTGTCATCAATTGCAGGGGGGATGTCTGTACTGGTGATATTGTTTTATTCTCACAGAAGGTCTATGAAAAGTATGATCTAGCATCAAGGGGTGGAGCACAAACTCCTATTGGCAAGCGCACTATAGCAGGGAAAATAGTGAAGGATAGCTATGGTGCAGCCAAGCAGCAGCATACTTTTACTGTTGAAATCCTCTGGAGCACAGGTGTAAAAGCCTTGCCTCCACTGTATCCACTGCTTATCAAGGGACGCAACTTGTACCGTTTGCAAACTTATCGCCAGCCTTGGCCAAATGAAGCGGAAAGAGCAAAAGTTTTGGCAGAGAAGCATGCAAGGGGGGATGAAGCTAGAAGTACTAGAGCTACTGCAAAGGCACAACGTGGAAGCAAAGGTAATAAACATTCCC

Fln Alignment:

sp_v1.1_unigene61840___LRLDECKAYLRKHGLRITGSKSVCIQRIHEHMKVKDGCGQNLYPRSSFVINCRGDVCTGDIVLFSQKVYEKYDLASRGGAQTPIGKRTIAGKIVKDSYGAAKQQHTFTVEILWSTGVKALPPLYPLLIKGRNLYRLQTYRQPWPNEAERAKVLAEKHARGDEARSTR
Q338N2_______________LKVYECKAYLRMHKLRLSGNKEVLLTRIRGQIEVKT-MGEVKYPVSSFVLNCQGDSCKGDVVVFEQNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEILWSRGYKPWPPLHPLLIKGRNLYKDKTMRQPWLDEEERNRALQEKHARGYVARKTR

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
320		80	20		0.995493
321	20	80			0.995493
322			20	80	0.995493
327	20			80	0.995493
331	20			80	0.995493
334	80		20		0.995493
339			20	80	0.995493
342			25	50	0.995533
537	33	66			0.997461
539			33	66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain