SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61632

Length: 214 nt

UniGene Fasta

>sp_v1.1_unigene61632
ATGGGATGAAGAGACCAGAGGTGTCCTCAAGATATTCTTGGAGAATGTGGTTAGGTTTGCTGTCACTTATACTGAGCACGCTCGTAGAAAGACAGTAACTGCCATGGATGTGGTCTATTCGCTGAAGAGGCAAGGCAGGACCCTCTATGGCTTCGGCGGTTGAAGAGTTCTACTGTTTAAATTTCGCCATTTTCATAACCCAAGGTGTCTTTCG

Ace file of the UniGene sp_v1.1_unigene61632

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H4 (Fragment) n=5 Tax=Magnoliophyta RepID=D7TLW3_VITVI	-	-	1.0e-19	94%
FL-Next	sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	histone h4	-	-	9.39819e-20	98%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histone H4	IPR001951	-	9.39819e-20	98%
Blast2go	Histone core	IPR007125	-	9.39819e-20	98%
Blast2go	Histone-fold	IPR009072	-	9.39819e-20	98%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLQ1

Fln msg: your sequence is shorter than subject: 54 - 103

Fln protein: WDEETRGVLKIFLENVVRFAVTYTEHARRKTVTAMDVVYSLKRQGRTLYGFGG*

Protein Length: 55

Fln nts: ATGGGATGAAGAGACCAGAGGTGTCCTCAAGATATTCTTGGAGAATGTGGTTAGGTTTGCTGTCACTTATACTGAGCACGCTCGTAGAAAGACAGTAACTGCCATGGATGTGGTCTATTCGCTGAAGAGGCAAGGCAGGACCCTCTATGGCTTCGGCGGTTGA___AGAGTTCTACTGTTTAAATTTCGCCATTTTCATAACCCAAGGTGTCTTTCG

Fln Alignment:

sp_v1.1_unigene61632___EETRGVLKIFLENVVRFAVTYTEHARRKTVTAMDVVYSLKRQGRTLYGFGG
A9NLQ1_______________EETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYSLKRQGRTLYGFGG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
112	50		50		1.0
145		80		20	0.995496
146		20		80	0.995494
164	60		40		1.0
176	40			60	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain