SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61586

Length: 323 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene61586
AGGGAAGTTATTCCCTGTTGAGATATTATACAGTACAGATCGACCTGTCAGTTACCTTGAATCTTCATTACAGACAGCTATAGATATACATACTCGACAACCTCCGGGTGACATACTCTTGTTTATGACTGGACAGGATGATATTGATAAAGCAGTTTCAAAGCTGGAGGAAAGGATCACGAATCTAGATGAAGGTTCCTGCATGGATGCCATAATCTTTCCTCTTCATGCTTCTCTTCCACCTGAAATGCAGATATGTCATTGATCCAGGCTTTGTGAAGCAACGCCAATACAACCCTGGGACTGGGATGTACTCTCTTGAT

Ace file of the UniGene sp_v1.1_unigene61586

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RMI9_RICCO	-	-	6.0e-39	72%
FL-Next	sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Blast2go	atp-dependent rna	-	-	1.06894e-38	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	helicase activity	GO:0004386	Molecular Function	1.06894e-38	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22899

Fln msg: Separated hits, possible frame ERROR between 253 and 255, Distance to subject end: 341 aas, your sequence is shorter than subject: 108 - 729

Fln protein: GKLFPVEILYSTDRPVSYLESSLQTAIDIHTRQPPGDILLFMTGQDDIDKAVSKLEERITNLDEGSCMDAIIFPLHASLPPEMxxYVIDPGFVKQRQYNPGTGMYSLD

Protein Length: 109

Fln nts: AGGGAAGTTATTCCCTGTTGAGATATTATACAGTACAGATCGACCTGTCAGTTACCTTGAATCTTCATTACAGACAGCTATAGATATACATACTCGACAACCTCCGGGTGACATACTCTTGTTTATGACTGGACAGGATGATATTGATAAAGCAGTTTCAAAGCTGGAGGAAAGGATCACGAATCTAGATGAAGGTTCCTGCATGGATGCCATAATCTTTCCTCTTCATGCTTCTCTTCCACCTGAAATGCAxxxATATGTCATTGATCCAGGCTTTGTGAAGCAACGCCAATACAACCCTGGGACTGGGATGTACTCTCTTGAT

Fln Alignment:

sp_v1.1_unigene61586___GKLFPVEILYSTDRPVSYLESSLQTAIDIHTRQPPGDILLFMTGQDDIDKAVSKLEERITNLDEGSCMDAIIFPLHASLPPEMQxYVIDPGFVKQRQYNPGTGMYSL
O22899_______________GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVSNLGD-QVGPVKVVPLYSTLPPAMQxYVIDPGFAKQKVYNPRIRVESL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain