SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61566

Length: 432 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene61566
TTCTGACAGGAGTCCTAGTATTCACATCCACTCCAAACAATGAGATAAACAAGAACTACCTGGGACCAGCTCCACAAGAAGAAATGGCAAGACAAATAGCAAAAGCTGTTGGCCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAGAAAACCATGGCTGGCATTGGTCATGAAGACCAGCGATTGATCAAACTTGCAAATGAGGTCAGGAGAATTCTTGGAGGCATTCATGAGGATTACTACTAACTTTCAGAATCCTGTTCTTTTCTAGTGTAAACGACGACAGGCTAATTACAGTGGGGAGATATACAAATTCTTGCAATAGTTACAGATAACTTGGAATTAATCTGAAAGTGGTTAAAATGGTTACCATTATTGTAATGACCATGATTTTTCAATACAGCCCATCCCAAATGGGAAAGCATTG

Ace file of the UniGene sp_v1.1_unigene61566

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cation transport protein chaC, putative n=1 Tax=Ricinus communis RepID=B9SPS7_RICCO	-	-	2.0e-24	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	like family protein	-	-	4.68643e-27	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to lead ion	GO:0010288	Biological Process	4.68643e-27	81%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	4.68643e-27	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ChaC-like protein	IPR006840	-	4.68643e-27	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK82

Fln msg: your sequence is shorter than subject: 83 - 195

Fln protein: LTGVLVFTSTPNNEINKNYLGPAPQEEMARQIAKAVGPCGNNRDYLFKLEKTMAGIGHEDQRLIKLANEVRRILGGIHEDYY*

Protein Length: 84

Fln nts: TTCTGACAGGAGTCCTAGTATTCACATCCACTCCAAACAATGAGATAAACAAGAACTACCTGGGACCAGCTCCACAAGAAGAAATGGCAAGACAAATAGCAAAAGCTGTTGGCCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAGAAAACCATGGCTGGCATTGGTCATGAAGACCAGCGATTGATCAAACTTGCAAATGAGGTCAGGAGAATTCTTGGAGGCATTCATGAGGATTACTACTAA___CTTTCAGAATCCTGTTCTTTTCTAGTGTAAACGACGACAGGCTAATTACAGTGGGGAGATATACAAATTCTTGCAATAGTTACAGATAACTTGGAATTAATCTGAAAGTGGTTAAAATGGTTACCATTATTGTAATGACCATGATTTTTCAATACAGCCCATCCCAAATGGGAAAGCATTG

Fln Alignment:

sp_v1.1_unigene61566___LTGVLVFTSTPNNEINKNYLGPAPQEEMARQIAKAVGPCGNNRDYLFKLEKTMAGIGHEDQRLIKLANEVRRILGGIHEDYY
B8LK82_______________LTGVLVFISTPDKSINKYYLGPASLQEMARQIAKAAGPCGNNRDYLFKLEQALDSIGHAEQGVIKLANEVRKILGGIHDVFH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain