SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61519

Length: 551 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene61519
GTTTTCAATTCAAGCGGGAACCTTGTGTTCAGAGTGGACAACTATACTTTCAGATCTCAAAAATGAAATTGTTTTCATGGACGCTGCAGGAATGGCACTCCTCACAATACGACGGAAGAGCTGGTTCAGCCTGCAGAATCAACGGAAAGGTTTCGAGGGAGATTTCCGTGAAGGCCAAAAACCATTGTTTGTTGTTAGAAGGGCGACCCCTCTGCTAATTCTCGCCAAGACTTTAGCAGAGGTGTATATGTATTCTTCGGTTACAAAGAAACAGAAACCACAGTTTGACTACCGTGTTGCAGGATGTTATGCCAAACGTTCCTTCACCATTCTCAACAGCTTTAACGAAGTCGTTGCAGAGCCAAAGCAGGTGAGGTCAGAGATAACTTTTGGAGGAGATGTGTTCAATTTGACGGTGAGCCCAACATGCTTTTATTATGGGTTTGATTGTGGTTTTTGATCAGATGATGCCATCTTGACTGGTGGGGGCATTTCCAGAATTAGAGACCATCAGGGAATATGTCTTAATTTATCACTTCTGGGTCGTGGAA

Ace file of the UniGene sp_v1.1_unigene61519

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF567 domain containing protein	-	-	4.0e-18	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	gtp binding	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tubby, C-terminal	IPR000007	-	0.0	56%
Blast2go	LURP1-like domain	IPR007612	-	0.0	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZY9

Fln msg: your sequence is shorter than subject: 153 - 208

Fln protein: FSIQAGTLCSEWTTILSDLKNEIVFMDAAGMALLTIRRKSWFSLQNQRKGFEGDFREGQKPLFVVRRATPLLILAKTLAEVYMYSSVTKKQKPQFDYRVAGCYAKRSFTILNSFNEVVAEPKQVRSEITFGGDVFNLTVSPTCFYYGFDCGF*

Protein Length: 154

Fln nts: GTTTTCAATTCAAGCGGGAACCTTGTGTTCAGAGTGGACAACTATACTTTCAGATCTCAAAAATGAAATTGTTTTCATGGACGCTGCAGGAATGGCACTCCTCACAATACGACGGAAGAGCTGGTTCAGCCTGCAGAATCAACGGAAAGGTTTCGAGGGAGATTTCCGTGAAGGCCAAAAACCATTGTTTGTTGTTAGAAGGGCGACCCCTCTGCTAATTCTCGCCAAGACTTTAGCAGAGGTGTATATGTATTCTTCGGTTACAAAGAAACAGAAACCACAGTTTGACTACCGTGTTGCAGGATGTTATGCCAAACGTTCCTTCACCATTCTCAACAGCTTTAACGAAGTCGTTGCAGAGCCAAAGCAGGTGAGGTCAGAGATAACTTTTGGAGGAGATGTGTTCAATTTGACGGTGAGCCCAACATGCTTTTATTATGGGTTTGATTGTGGTTTTTGA___TCAGATGATGCCATCTTGACTGGTGGGGGCATTTCCAGAATTAGAGACCATCAGGGAATATGTCTTAATTTATCACTTCTGGGTCGTGGAA

Fln Alignment:

sp_v1.1_unigene61519___AGTLCSEWTTILSDLKNEIVFMDAAGMALLTIRRKSWFSLQNQRKGFEGDFREGQKPLFVVRRATPLLILAKTLAEVYMYSSVTKKQKPQFDYRVAGCYAKRSFTILNSFNEVVAE--PKQVRSEITFGGDVFNLTVSPTCFYYGFDCGF
A9NZY9_______________SGNLVFRVDNYASDLKDEIVLMDAAGMALLTIRRKSWLSLQNQWKGFLGEFRDGKKPLFVVRRVTSLLIPTKTLAEVYMCSSAKRKGKPQFDYRVEGYYAKRSFTILNSLNKVVAEVKPKQVRSEITLGGDVFNLTVNP-----GYDQAF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
388	33			33	0.997728
389		33		66	0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain