SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61457

Length: 528 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene61457
AGTTTCAGTCACTCTCAACAAACCACTCTGGAATGGATGACCTTTGCAACTCGAGCTATGATGAAGCATGCCAACTGCCTACCTTTGATCACAATTTGATAGATCAATCAACAGCTCCTGATGACTCTTCTATCACAGAGGACCAAGTAATAGGTTGGCCTCCAATTCGATTGTACAGGAGGAACTCTCTTGGTTCCCTTCCTACACCTTCCGTGGAAAATCAACAAGAGGGTGCCATGGCAGGAAGCTTTGTGCAGGGTCAGGGCAATTCATTGTATGTCAAGGTAAGCATGGATGGTGTGCCCATTGGTAGAAAAGTGGACATGAATTCCTATGGATCCTATGAGTCTCTTGCTCAAGATTTGGAGAGTATGTTTCAACGAACCACTGAGAATCATCTCAGAGCTTGGACTCCCTTGGGAAGTCAGCACGTTGTGAAGCCTTTGAGGCTTTTGGACCCTGCTGCTGATTTTGTACTAACCTATGAAGATAGTGAAGGAGACTGCATGCTTGCCACGGATGTTCCAT

Ace file of the UniGene sp_v1.1_unigene61457

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-responsive protein IAA13, putative	-	-	2.0e-22	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	indole-3-acetic acid inducible 13	-	-	0.0	57%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	57%
Blast2go	pattern specification process	GO:0007389	Biological Process	57%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	57%
Blast2go	protein binding	GO:0005515	Molecular Function	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AUX/IAA protein	IPR003311	-	0.0	57%
Blast2go	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACN9

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 175 - 428

Fln protein: FQSLSTNHSGMDDLCNSSYDEACQLPTFDHNLIDQSTAPDDSSITEDQVIGWPPIRLYRRNSLGSLPTPSVENQQEGAMAGSFVQGQGNSLYVKVSMDGVPIGRKVDMNSYGSYESLAQDLESMFQRTTENHLRAWTPLGSQHVVKPLRLLDPAADFVLTYEDSEGDCMLATDVP

Protein Length: 176

Fln nts: AGTTTCAGTCACTCTCAACAAACCACTCTGGAATGGATGACCTTTGCAACTCGAGCTATGATGAAGCATGCCAACTGCCTACCTTTGATCACAATTTGATAGATCAATCAACAGCTCCTGATGACTCTTCTATCACAGAGGACCAAGTAATAGGTTGGCCTCCAATTCGATTGTACAGGAGGAACTCTCTTGGTTCCCTTCCTACACCTTCCGTGGAAAATCAACAAGAGGGTGCCATGGCAGGAAGCTTTGTGCAGGGTCAGGGCAATTCATTGTATGTCAAGGTAAGCATGGATGGTGTGCCCATTGGTAGAAAAGTGGACATGAATTCCTATGGATCCTATGAGTCTCTTGCTCAAGATTTGGAGAGTATGTTTCAACGAACCACTGAGAATCATCTCAGAGCTTGGACTCCCTTGGGAAGTCAGCACGTTGTGAAGCCTTTGAGGCTTTTGGACCCTGCTGCTGATTTTGTACTAACCTATGAAGATAGTGAAGGAGACTGCATGCTTGCCACGGATGTTCCAT

Fln Alignment:

sp_v1.1_unigene61457___FQSLSTNHSGMDDLCNSSYDEACQLPTFDHNLIDQS-TAPDDSSITEDQVIGWPPIRLYRRNSLGSLPTPSVENQQEGAMAGSFVQGQGNSLYVKVSMDGVPIGRKVDMNSYGSYESLAQDLESMFQRTTENHLRAWTPLGSQHVVKPLRLLDPAADFVLTYEDSEGDCMLATDVP
D5ACN9_______________FRSLATNHSGIDDLCNLSHDEACQLSSFDHNLTDNHLTAPGDSSITQGEVIGWPPIRLYRRNSLGSLPKPSGENRQGGAMAGRFVQGQGNSLYVKVTMDGVPIGRKVDINAYGSYESLAEDLENMFQRTTENHLGAWTPLGHQHVVKPLGLLDPAADFVLTYEDSEGDCMLATDVP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
274		20		80	0.995493
325		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain