SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61416

Length: 426 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene61416
ATGGGGGATTTCATTGTTCATATGAAATGCCGATCACTTGGAGAATATGTTGAAGGGCGGACTGATTGCATCACTGCCAGATTATTGACAGGAAGGGTTTTGATTTTCTTGTTGGCCTTGGCTGTGATTGGGTTGCCGCTGGTAATGGAGGTCCTGACCGAGCGTGCACACTTTATGAGGGAGAGTCTGAACAAAAGCCGGACTATCACGGACGGCATGGTTTCGATCCTTGGATCTTTCGATCACCGCCTCTCGGCCCTGGAAACCGCCATGCGTCCCACTCAGGTAGAAGCTAAGATTATAAAAGGACCTCGTGAGGACCTTGAAAGTTATTTAGCTGCAGTTGATCAATTGCGCAACAATGTTGAATTTTTAGCTCTAACAAAAGCTTCAAGAGTAGTGATGGAGTTCTCACCAATGCAAACA

Ace file of the UniGene sp_v1.1_unigene61416

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein binding protein, putative	-	-	2.0e-22	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	protein	-	-	2.19038e-32	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	lateral root morphogenesis	GO:0010102	Biological Process	2.19038e-32	61%
Blast2go	exocyst	GO:0000145	Cellular Component	2.19038e-32	61%
Blast2go	membrane	GO:0016020	Cellular Component	2.19038e-32	61%
Blast2go	nucleus	GO:0005634	Cellular Component	2.19038e-32	61%
Blast2go	cytosol	GO:0005829	Cellular Component	2.19038e-32	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exo70 exocyst complex subunit	IPR004140	-	2.19038e-32	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM1

Fln msg: Distance to subject end: 515 aas, your sequence is shorter than subject: 142 - 647

Fln protein: MGDFIVHMKCRSLGEYVEGRTDCITARLLTGRVLIFLLALAVIGLPLVMEVLTERAHFMRESLNKSRTITDGMVSILGSFDHRLSALETAMRPTQVEAKIIKGPREDLESYLAAVDQLRNNVEFLALTKASRVVMEFSPMQT

Protein Length: 143

Fln nts: _-_ATGGGGGATTTCATTGTTCATATGAAATGCCGATCACTTGGAGAATATGTTGAAGGGCGGACTGATTGCATCACTGCCAGATTATTGACAGGAAGGGTTTTGATTTTCTTGTTGGCCTTGGCTGTGATTGGGTTGCCGCTGGTAATGGAGGTCCTGACCGAGCGTGCACACTTTATGAGGGAGAGTCTGAACAAAAGCCGGACTATCACGGACGGCATGGTTTCGATCCTTGGATCTTTCGATCACCGCCTCTCGGCCCTGGAAACCGCCATGCGTCCCACTCAGGTAGAAGCTAAGATTATAAAAGGACCTCGTGAGGACCTTGAAAGTTATTTAGCTGCAGTTGATCAATTGCGCAACAATGTTGAATTTTTAGCTCTAACAAAAGCTTCAAGAGTAGTGATGGAGTTCTCACCAATGCAAACA

Fln Alignment:

sp_v1.1_unigene61416___IGLPLVMEVLTERAHFMRESLNKSRTITDGMVSILGSFDHRLSALETAMRPT--------------------------------QVEAKIIKGPREDLESYLAAVDQLRNNVEFLALTKA
A9NWM1_______________MGVPLVMEILTERAHFMRESLNKSRTITDGMVSILGSFDHRLSALETAMRPTQVRTHAIRKAHENIDKTLKAAEVILAQFDISRQVEAKIIKGPRDDLESYLAAVDQLRNNVEFFSSNKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain