SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61315

Length: 560 nt

UniGene Fasta

>sp_v1.1_unigene61315
ATGGGGGATCAGTTGATCAACACAGCCGAGGACGTTGGGGTGCTGAAAAACCGTGGTATAATCCACCATTACTTAGGCACTGACCAAGAAGTGGCCAATATTTGGAATAAAATGAGGGAAGGATATGATCAAAAGGGTAAATATGGACCAATCGACACTGCTATTAATGAAGTCATAAATTTCTACGGAAGCTATAGAATCTGGTTCTCTGAAGGAGTGAAAAGGTTTTTCTCAAAGCCATGGCTAGTAGTATCTTTTATTGCAGGATGTATCATCGTGATTACAGCTATAGTGCAAACTATTTTCTCTGCGTTGCAACTCCACCACCACTAAATACAAAGTCCGACGAAAAGTATAATATTCATGCCATAATCAATCGGCCCTATACTGTGAAATCCCGAAATAGCAATAGCAATAGCTTCAGCTTCTGCCCTCTATTCAGTGCTCTATTCGGTATTAATGTATAGCTTCTGATAGGTATTAATGTGTCGTCCGGTATCCGTGCCCTCTATAGCTTCTGATAGATATTAATGTGTCGTCCGGCTATTCAGTGCTCTCTC

Ace file of the UniGene sp_v1.1_unigene61315

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF247 domain containing protein	-	-	6.0e-15	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	unknown [Picea sitchensis]	-	-	5.29597e-21	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF247, plant	IPR004158	-	5.29597e-21	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUU0

Fln msg: your sequence is shorter than subject: 111 - 462

Fln protein: MGDQLINTAEDVGVLKNRGIIHHYLGTDQEVANIWNKMREGYDQKGKYGPIDTAINEVINFYGSYRIWFSEGVKRFFSKPWLVVSFIAGCIIVITAIVQTIFSALQLHHH*

Protein Length: 112

Fln nts: ATGGGGGATCAGTTGATCAACACAGCCGAGGACGTTGGGGTGCTGAAAAACCGTGGTATAATCCACCATTACTTAGGCACTGACCAAGAAGTGGCCAATATTTGGAATAAAATGAGGGAAGGATATGATCAAAAGGGTAAATATGGACCAATCGACACTGCTATTAATGAAGTCATAAATTTCTACGGAAGCTATAGAATCTGGTTCTCTGAAGGAGTGAAAAGGTTTTTCTCAAAGCCATGGCTAGTAGTATCTTTTATTGCAGGATGTATCATCGTGATTACAGCTATAGTGCAAACTATTTTCTCTGCGTTGCAACTCCACCACCACTAA___ATACAAAGTCCGACGAAAAGTATAATATTCATGCCATAATCAATCGGCCCTATACTGTGAAATCCCGAAATAGCAATAGCAATAGCTTCAGCTTCTGCCCTCTATTCAGTGCTCTATTCGGTATTAATGTATAGCTTCTGATAGGTATTAATGTGTCGTCCGGTATCCGTGCCCTCTATAGCTTCTGATAGATATTAATGTGTCGTCCGGCTATTCAGTGCTCTCTC

Fln Alignment:

sp_v1.1_unigene61315___DQLINTAEDVGVLKNRGIIHHYLGTDQEVANIWNKMREGYDQKGKYGPIDTAINEVINFYGSYR--IWFSEGVKRFFSKPWLVVSFIAGCIIVITAIVQTIFS
A9NUU0_______________DRLINTAADVEVLRNGGILHNRLGTDEEVAGVWNGMRKVMG-KGEYEPIDSAIDDVITFYTNYEYIMICGELKEKYFPRAWLVVSTLAGCIVLLLSVLQTILA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain