SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61253

Length: 561 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene61253
CGTCGTGACCTTGGGTTTCACTCAGCAATGGTTCCATTTTCAAAGTTTGGACTATGCCATGGAGTTGTTTTATGGATGGATTGGGTTATGGACCCAGAAGAATCTATTGTGATCTCTACAAAACCAGGTCCAAGACCAAGTTATTGGAAACAAGGTGTGAAACTTTTAAAGCACCCAATACAAATTGGAAATATCGACCGTAATCTAGATCCAGAGCATAGCAGCGGGGTGCCCATTGTTCCATCCTCATTTGCTTCTTCTATTATGCTAGAAGGCTTGTTTGATCCTTCTAATGGTAAATTAGATATAAAATAGATTTTGTCAATTCCTAATGTATATTGCGTCAAAACTGCGAAAGGTATCTCATAGAATTAGATTGGTGGATCAAAGTAAAGGTTAACATGTGACTCATTTTATTAAACATTTTGCCTAATCCTTTCGTTTATGTGAGCTAAGCATTGTTCCCTAAACCATTTGTTCATTTATTTCACAATTCTTAAGCAGTTTCTTGTTTATAAAACATGACATGCTTAATTTCAATTGTTATATTCCACTAAGAAT

Ace file of the UniGene sp_v1.1_unigene61253

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRMT1503; protein arginine N-methyltransferase; K11438 protein arginine N-methyltransferase 7 [EC:2.1.1.-]	-	-	2.0e-14	46%
FL-Next	sp=Protein arginine N-methyltransferase 1.6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	protein arginine n-methyltransferase	-	-	4.88842e-14	59%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	2.0e-14	46%

Source	KEGGs	Term	e value	Identity
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	2.0e-14	46%
AutoFact	Tetracycline biosynthesis	00253	2.0e-14	46%
AutoFact	Histidine metabolism	00340	2.0e-14	46%
AutoFact	Tyrosine metabolism	00350	2.0e-14	46%
AutoFact	Phenylalanine metabolism	00360	2.0e-14	46%
AutoFact	Tryptophan metabolism	00380	2.0e-14	46%
AutoFact	Benzoxazinoid biosynthesis	00402	2.0e-14	46%
AutoFact	Selenocompound metabolism	00450	2.0e-14	46%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	2.0e-14	46%
AutoFact	Polycyclic aromatic hydrocarbon degradation	00624	2.0e-14	46%
AutoFact	Methane metabolism	00680	2.0e-14	46%
AutoFact	Porphyrin and chlorophyll metabolism	00860	2.0e-14	46%
AutoFact	Carotenoid biosynthesis	00906	2.0e-14	46%
AutoFact	Phenylpropanoid biosynthesis	00940	2.0e-14	46%
AutoFact	Flavonoid biosynthesis	00941	2.0e-14	46%
AutoFact	Anthocyanin biosynthesis	00942	2.0e-14	46%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	2.0e-14	46%
AutoFact	Isoquinoline alkaloid biosynthesis	00950	2.0e-14	46%
AutoFact	Insect hormone biosynthesis	00981	2.0e-14	46%
AutoFact	Biosynthesis of type II polyketide products	01057	2.0e-14	46%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	2.0e-14	46%
AutoFact	Metabolic pathways	01100	2.0e-14	46%
AutoFact	Biosynthesis of secondary metabolites	01110	2.0e-14	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q944R7

Fln msg: your sequence is shorter than subject: 105 - 724

Fln protein: RRDLGFHSAMVPFSKFGLCHGVVLWMDWVMDPEESIVISTKPGPRPSYWKQGVKLLKHPIQIGNIDRNLDPEHSSGVPIVPSSFASSIMLEGLFDPSNGKLDIK*

Protein Length: 106

Fln nts: CGTCGTGACCTTGGGTTTCACTCAGCAATGGTTCCATTTTCAAAGTTTGGACTATGCCATGGAGTTGTTTTATGGATGGATTGGGTTATGGACCCAGAAGAATCTATTGTGATCTCTACAAAACCAGGTCCAAGACCAAGTTATTGGAAACAAGGTGTGAAACTTTTAAAGCACCCAATACAAATTGGAAATATCGACCGTAATCTAGATCCAGAGCATAGCAGCGGGGTGCCCATTGTTCCATCCTCATTTGCTTCTTCTATTATGCTAGAAGGCTTGTTTGATCCTTCTAATGGTAAATTAGATATAAAATAG___ATTTTGTCAATTCCTAATGTATATTGCGTCAAAACTGCGAAAGGTATCTCATAGAATTAGATTGGTGGATCAAAGTAAAGGTTAACATGTGACTCATTTTATTAAACATTTTGCCTAATCCTTTCGTTTATGTGAGCTAAGCATTGTTCCCTAAACCATTTGTTCATTTATTTCACAATTCTTAAGCAGTTTCTTGTTTATAAAACATGACATGCTTAATTTCAATTGTTATATTCCACTAAGAAT

Fln Alignment:

sp_v1.1_unigene61253___VPFSKFGLCHGVVLWMDWVMDPEESIVISTKPGPRPSYWKQGVKLLKHPIQIGNIDRNLDPEHSSGV
Q944R7_______________IEFIKPGVCHGIALWMDWVMDEENSTVIST--GPDDKYWKQGVKLLGKPVTV----RMEGPSSSIGI

SNPs (tot: 4)

Position	A %	G %	T %	Probability
87	25	75		0.996486
89		25	75	0.996474
90	75	25		0.996474
91		25	75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain