SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61251

Length: 419 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene61251
GGGTCAAGTCCATTACAGAATGTAGAGAAACCCTTTGTTTTGACAAGGTCAGACAGAGATCTATTGCAGAGACCTGGTTATGATCTGCAGGTCTGGTGCATTCTTCTTAATGATACAGTGCTGTTTAGGATGCAATGGCCACAATATGCTGATCTTCGGGTTAATGGAGTAAATGTGCGCGTGACAAATAGGCCAGGGCCTCAGTTGTTAGGATTCAATGGGCGTGATGACGGTGCAGGGATCATAGCTTACAGCAGGGAAGGAACCAACAAAGTGTCATTGTCAGCTTATGATGCTCGGCAATTTTGTATGGGTGTGAGGATTGTTAAACGTCGAACTTCTGAACAGGTTTTGCGTTTAGTGCCACATGAGACAGAAGGTGAACCTTTGGAAGAGGCTCTTGCTCGTGTTCGGCGTTG

Ace file of the UniGene sp_v1.1_unigene61251

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SIZ1; SIZ1; DNA binding / SUMO ligase	-	-	5.99994e-41	58%
FL-Next	Isoform 2 of E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1	-	-	0.0	64%
Blast2go	protein	-	-	8.98513e-42	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell growth	GO:0016049	Biological Process	8.98513e-42	78%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	8.98513e-42	78%
Blast2go	cell division	GO:0051301	Biological Process	8.98513e-42	78%
Blast2go	response to freezing	GO:0050826	Biological Process	8.98513e-42	78%
Blast2go	regulation of abscisic acid mediated signaling pathway	GO:0009787	Biological Process	8.98513e-42	78%
Blast2go	regulation of salicylic acid metabolic process	GO:0010337	Biological Process	8.98513e-42	78%
Blast2go	binding	GO:0005488	Molecular Function	8.98513e-42	78%
Blast2go	SUMO ligase activity	GO:0019789	Molecular Function	8.98513e-42	78%
Blast2go	nucleus	GO:0005634	Cellular Component	8.98513e-42	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q680Q4-2

Fln msg: Distance to subject end: 498 aas, your sequence is shorter than subject: 139 - 832

Fln protein: GSSPLQNVEKPFVLTRSDRDLLQRPGYDLQVWCILLNDTVLFRMQWPQYADLRVNGVNVRVTNRPGPQLLGFNGRDDGAGIIAYSREGTNKVSLSAYDARQFCMGVRIVKRRTSEQVLRLVPHETEGEPLEEALARVRR

Protein Length: 140

Fln nts: GGGTCAAGTCCATTACAGAATGTAGAGAAACCCTTTGTTTTGACAAGGTCAGACAGAGATCTATTGCAGAGACCTGGTTATGATCTGCAGGTCTGGTGCATTCTTCTTAATGATACAGTGCTGTTTAGGATGCAATGGCCACAATATGCTGATCTTCGGGTTAATGGAGTAAATGTGCGCGTGACAAATAGGCCAGGGCCTCAGTTGTTAGGATTCAATGGGCGTGATGACGGTGCAGGGATCATAGCTTACAGCAGGGAAGGAACCAACAAAGTGTCATTGTCAGCTTATGATGCTCGGCAATTTTGTATGGGTGTGAGGATTGTTAAACGTCGAACTTCTGAACAGGTTTTGCGTTTAGTGCCACATGAGACAGAAGGTGAACCTTTGGAAGAGGCTCTTGCTCGTGTTCGGCGTTG

Fln Alignment:

sp_v1.1_unigene61251___GSSPLQNVEKPFVLTRSDRDLLQRPGYDLQVWCILLNDTVLFRMQWPQYADLXXXXXXXXXXXXPGPQLLGFNGRDDGAGIIAYSREGTNKVSLSAYDARQFCMGVRIVKRRTSEQVLRLVPHETEGEPLEEALARVRR
Q680Q4-2_____________GASTMQSVERTFQITRADKDLLAKPEYDVQAWCMLLNDKVLFRMQWPQYADLQVNGVPVRAINRPGGQLLGVNGRDDGPIITSCIRDGVNRISLSGGDVRIFCFGVRLVKRRTLQQVLNLIPEEGKGETFEDALARVRR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
232	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain