SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61183

Length: 485 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene61183
CGTCGTGACCTTGGCTGTCACTCTAATTGCATCTGTAGCTTCAGCTTGTGCTATAACTTTGGTGGTTTCATTTCTTTTTCTTCTCTCATGCTTTGGAAAACGATATCTAGCCACATCTTCTGGCAGTCAGTCTGGGAGAAAAGATGTTGTCACCTTTACAAATATTGGGGTTCAATTGACTTATGAAAATGTAGTCAGAGCAACAGGAAACTTTAATGTTGGTAATTTAATTGGTAATGGTGGTTTTGGGTCAACGTACAAGGCTGAGCTGATCCCCCCAGGATTGTTACTAGCAGTAAAGAGACTTTCAGTGGGACGTTTTCAGGGGATTCAGCAATTTGATGCAGAAATCATTACTCTTGGAAGTATACGGCATCAAAATCTGGTGACATTAATAGGTTACTATGCAAGTGAAACAGAGATGTTTCTGATCTACAACTATCTGCCAGGAGGCAACTTAGAAAGCTTTATCCATGAGAGATCAA

Ace file of the UniGene sp_v1.1_unigene61183

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.12.2 1.3.1.74)	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	radial axis specification	GO:0009945	Biological Process	77%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	77%
Blast2go	response to water deprivation	GO:0009414	Biological Process	77%
Blast2go	response to cold	GO:0009409	Biological Process	77%
Blast2go	embryonic meristem development	GO:0048508	Biological Process	77%
Blast2go	lignin metabolic process	GO:0009808	Biological Process	77%
Blast2go	pollen maturation	GO:0010152	Biological Process	77%
Blast2go	anther development	GO:0048653	Biological Process	77%
Blast2go	pollen germination	GO:0009846	Biological Process	77%
Blast2go	catalytic activity	GO:0003824	Molecular Function	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	77%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	77%
Blast2go	Protein kinase-like domain	IPR011009	-	77%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 306 aas, your sequence is shorter than subject: 161 - 656

Fln protein: VVTLAVTLIASVASACAITLVVSFLFLLSCFGKRYLATSSGSQSGRKDVVTFTNIGVQLTYENVVRATGNFNVGNLIGNGGFGSTYKAELIPPGLLLAVKRLSVGRFQGIQQFDAEIITLGSIRHQNLVTLIGYYASETEMFLIYNYLPGGNLESFIHERS

Protein Length: 162

Fln nts: CGTCGTGACCTTGGCTGTCACTCTAATTGCATCTGTAGCTTCAGCTTGTGCTATAACTTTGGTGGTTTCATTTCTTTTTCTTCTCTCATGCTTTGGAAAACGATATCTAGCCACATCTTCTGGCAGTCAGTCTGGGAGAAAAGATGTTGTCACCTTTACAAATATTGGGGTTCAATTGACTTATGAAAATGTAGTCAGAGCAACAGGAAACTTTAATGTTGGTAATTTAATTGGTAATGGTGGTTTTGGGTCAACGTACAAGGCTGAGCTGATCCCCCCAGGATTGTTACTAGCAGTAAAGAGACTTTCAGTGGGACGTTTTCAGGGGATTCAGCAATTTGATGCAGAAATCATTACTCTTGGAAGTATACGGCATCAAAATCTGGTGACATTAATAGGTTACTATGCAAGTGAAACAGAGATGTTTCTGATCTACAACTATCTGCCAGGAGGCAACTTAGAAAGCTTTATCCATGAGAGATCAA

Fln Alignment:

sp_v1.1_unigene61183___SSGSQSGRKDVVTFTNIGVQL------TYENVVRATGNFNVGNLIGNGGFGSTYKAELIPPGLLLAVKRLSVGRFQGIQQFDAEIITLGSIRHQNLVTLIGYYASETEMFLIYNYLPGGNLESFIH
C0PRI9_______________SSSGFSGSKQPLPPPSPGISLGISRTFTYEDLEAATNGFSRTNLLGQGGFGYVYKG-ILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLH

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
167	16		83		0.994513
377	80			20	0.995493
380	80		20		0.995493
381	80	20			0.995493
383	80		20		0.995493
386			20	80	0.995493
387	20		80		0.995493
396		20		80	0.995493
397		25		75	0.996473
399	75	25			0.996473
404	25		75		0.996473
405		25		75	0.996473
407	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain