SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61143

Length: 340 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene61143
ATGGGGAGAGCCTTACCGATGGGGATTGTTGCTGCTCTGTATTCATTCATGGAGATCGAAGAGTCTTCAGCCGCAGCAGCTGCTGCAACAGAACATGGAGGTCTCAATCGCCAAAGTTATCTGAGCCCTCTGAGCCATGCTCTGTGGAGGACAACAGCTGATACTGCTGAGATCGGGCAGCTCTCTGCGTATCTCACATGGACGGACTTGACTGTTGCAGTGACAAATGCAAAGGGAGAAACTCAGAACCTGCTTCGAGGATTGAATGGTTATGCAGAGCCCGGACATATAATGGCTATCATGGGACCTTCAGGATCTGGCAAATCTACTCTTATTGATA

Ace file of the UniGene sp_v1.1_unigene61143

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter G family member 11 n=3 Tax=Arabidopsis RepID=AB11G_ARATH	-	-	3.0e-21	57%
FL-Next	sp=ABC transporter G family member 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	white-brown-complex abc transporter family	-	-	6.49586e-21	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	cutin transport	GO:0080051	Biological Process	6.49586e-21	68%
Blast2go	external side of plasma membrane	GO:0009897	Cellular Component	6.49586e-21	68%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8RXN0

Fln msg: Distance to subject end: 605 aas, your sequence is shorter than subject: 113 - 703

Fln protein: MGRALPMGIVAALYSFMEIEESSAAAAAATEHGGLNRQSYLSPLSHALWRTTADTAEIGQLSAYLTWTDLTVAVTNAKGETQNLLRGLNGYAEPGHIMAIMGPSGSGKSTLID

Protein Length: 114

Fln nts: _-_ATGGGGAGAGCCTTACCGATGGGGATTGTTGCTGCTCTGTATTCATTCATGGAGATCGAAGAGTCTTCAGCCGCAGCAGCTGCTGCAACAGAACATGGAGGTCTCAATCGCCAAAGTTATCTGAGCCCTCTGAGCCATGCTCTGTGGAGGACAACAGCTGATACTGCTGAGATCGGGCAGCTCTCTGCGTATCTCACATGGACGGACTTGACTGTTGCAGTGACAAATGCAAAGGGAGAAACTCAGAACCTGCTTCGAGGATTGAATGGTTATGCAGAGCCCGGACATATAATGGCTATCATGGGACCTTCAGGATCTGGCAAATCTACTCTTATTGATA

Fln Alignment:

sp_v1.1_unigene61143___MEIEESSXXXXXXTEHGGLNRQ-SYLSPLSHALWRTTADTAEIGQLSAYLTWTDLTVAVTNAKGETQNLLRGLNGYAEPGHIMAIMGPSGSGKSTLID
Q8RXN0_______________MEIEASRQQTTVPVSVGGGNFPVGGLSPLSEAIWREKAPTEFVGDVSARLTWQDLTVMVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
150	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain