SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61118

Length: 540 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene61118
CGTCGTGACCTTGGCTGTCACTCAAATTGGATACTGTAAAGCATGTTATTTACATGGAAGACGAGGGCATTACATCCGAGCCATCTCTGTCTGGAGGGAGCAGCAGCTGGACAGTGTCATCTATGTCCAGGGTTGAGCGTTTGGGTCGGGAGAGTCCTGTTGATGCAGATTTGCCGGTAGCTGCTGACATTGCAGTTATAATGTATACAAGTGGCAGTACTGGCTTGCCTAAGGGAGTCATGATGACTCATGGAAATATTGTAGCGACAGTTGCTGCCGTGATGACAATTGTTCCAGGCCTTAGTAACAAAGACATATATCTGGCATACTTGCCGTTAGCTCATATTCTTGAACTAGAGCTGAGGCTGTAATGGTTGCTTCAGGGATTGCTATTGGTTATGGTTCAACTTTGACACTAACTGATACATCAAGCAAGATTAAAAAAGGAACCAAAGGAGATGCTTCTATGCTGGGTCCAACATTGAATAGAACTAGACTAGTAACCGGACTAATTTTAAGAATACGTGTCAGGGATGGTGT

Ace file of the UniGene sp_v1.1_unigene61118

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable acyl-CoA synthetase, 62297-59022 [imported]-Arabidopsis thaliana n=2 Tax=Oryza sativa RepID=Q53JH3_ORYSJ	-	-	3.0e-36	51%
FL-Next	sp=Long chain acyl-CoA synthetase 9, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Blast2go	long chain acyl- synthetase 9	-	-	3.41885e-36	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	3.41885e-36	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid metabolism	00071		3.41885e-36	78%
Blast2go	Metabolic pathways	01100		3.41885e-36	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	3.41885e-36	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.41885e-36	78%
Blast2go	membrane	GO:0016020	Cellular Component	3.41885e-36	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9CAP8

Fln msg: Separated hits, possible frame ERROR between 347 and 359, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 331 aas, your sequence is shorter than subject: 179 - 691

Fln protein: S*PWLSLKLDTVKHVIYMEDEGITSEPSLSGGSSSWTVSSMSRVERLGRESPVDADLPVAADIAVIMYTSGSTGLPKGVMMTHGNIVATVAAVMTIVPGLSNKDIYLAYLPLAHxxxxxAEAVMVASGIAIGYGSTLTLTDTSSKIKKGTKGDASMLGPTLNRTRLVTGLILRIRVRDG

Protein Length: 180

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTGGATACTGTAAAGCATGTTATTTACATGGAAGACGAGGGCATTACATCCGAGCCATCTCTGTCTGGAGGGAGCAGCAGCTGGACAGTGTCATCTATGTCCAGGGTTGAGCGTTTGGGTCGGGAGAGTCCTGTTGATGCAGATTTGCCGGTAGCTGCTGACATTGCAGTTATAATGTATACAAGTGGCAGTACTGGCTTGCCTAAGGGAGTCATGATGACTCATGGAAATATTGTAGCGACAGTTGCTGCCGTGATGACAATTGTTCCAGGCCTTAGTAACAAAGACATATATCTGGCATACTTGCCGTTAGCTCATATxxxxxxxxxxxxAGCTGAGGCTGTAATGGTTGCTTCAGGGATTGCTATTGGTTATGGTTCAACTTTGACACTAACTGATACATCAAGCAAGATTAAAAAAGGAACCAAAGGAGATGCTTCTATGCTGGGTCCAACATTGAATAGAACTAGACTAGTAACCGGACTAATTTTAAGAATACGTGTCAGGGATGGTGT

Fln Alignment:

sp_v1.1_unigene61118___LSLKLDTVKHVIYMEDEGITXXXXXXXXXXXXXXXXXXRVERLGRESPVDADLPVAADIAVIMYTSGSTGLPKGVMMTHGNXXXXXXXXXXXXPGLSNKDIYLAYLPLAHIxxxxAEAVMVASGIAIGYGSTLTLTDTSSKIKKGTKGDASMLGPTLNRTRLVTGLILRIRVRDG
Q9CAP8_______________ISQQLETVKRVICMDDE------FPSDVNSNWMATSFTDVQKLGRENPVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLPLAHIxxxxAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTI----MTAVPAILDRVRDG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
7		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain