SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61077

Length: 432 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene61077
AGGACGTCTAACCAGAGCGCTCACGCAGGTGTACCTTATTAATCGACCATACATATTTTGGGCAGCATGGAAGATAGTATCTCCTTTTATTGACAAAGTAACAAGGCAAAAGATTGTTTTCACTGACGATAAATATGTCAAAGAAACATTACTGAAGGATATTGATGAAAATCAACTACCTGAAATCTATGGAGGGAAATTACCTTTAGTTCCAATAGATGATTGTGTTGTACCAAATTGGCCCCCAATAATCTCATGTTAGGAATCTAGAAGAACTTTAATAGCGATGATCATATTGAAGTATACTAGTTGTTCTTTAGTGTTTGTACCGAAATCATAAATTGTTCCTCAAATTTATTTCAACTTCTTACAAGAACAAAAATATATTTAAAACAATGAAATGTTCAATGTTAACTATTTAGAATAACTTGC

Ace file of the UniGene sp_v1.1_unigene61077 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRAL_TRIO domain containing protein	-	-	9.0e-16	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein	-	-	3.95811e-34	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	CRAL-TRIO domain	IPR001251	-	3.95811e-34	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKZ9

Fln msg: your sequence is shorter than subject: 87 - 273

Fln protein: GRLTRALTQVYLINRPYIFWAAWKIVSPFIDKVTRQKIVFTDDKYVKETLLKDIDENQLPEIYGGKLPLVPIDDCVVPNWPPIISC*

Protein Length: 88

Fln nts: AGGACGTCTAACCAGAGCGCTCACGCAGGTGTACCTTATTAATCGACCATACATATTTTGGGCAGCATGGAAGATAGTATCTCCTTTTATTGACAAAGTAACAAGGCAAAAGATTGTTTTCACTGACGATAAATATGTCAAAGAAACATTACTGAAGGATATTGATGAAAATCAACTACCTGAAATCTATGGAGGGAAATTACCTTTAGTTCCAATAGATGATTGTGTTGTACCAAATTGGCCCCCAATAATCTCATGTTAG___GAATCTAGAAGAACTTTAATAGCGATGATCATATTGAAGTATACTAGTTGTTCTTTAGTGTTTGTACCGAAATCATAAATTGTTCCTCAAATTTATTTCAACTTCTTACAAGAACAAAAATATATTTAAAACAATGAAATGTTCAATGTTAACTATTTAGAATAACTTGC

Fln Alignment:

sp_v1.1_unigene61077___LTQVYLINRPYIFWAAWKIVSPFIDKVTRQKIVFTDDKYVKETLLKDIDENQLPEIYGGKLPLVPIDDCVVPNWPPIIS
A9NKZ9_______________LGKVYLIHRPYIFWAAWKIVSPFIDKVTRQKIVFTDDKRVKETLLKDIDENQLPEIYGGKLPLVTIQDSVVPNWPPVTS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
257	50		50		1.0
316	80		20		0.995493
317	80	20			0.995493
321			20	80	0.995493
322		80	20		0.995493
324		20		80	0.995493
325	20			80	0.995493
326		20		80	0.995493
328	20	80			0.995493
330			20	80	0.995493
361		75	25		0.996473
362	25			75	0.996473
363			25	75	0.996473
364		75		25	0.996473
365		75	25		0.996473
370	25			75	0.996473
377	75		25		0.996474
378	75		25		0.996474
382		33		66	0.997452
386		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain