SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene61018

Length: 533 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene61018
ATGATCGCTAAACTCCTCAACACACGGTCACTGAGGAGATTTGCATATGCAACAGGTAGTGAGTCTTGTAATGGCGCCACCACTAACGGATTTCACTTCATTGGACCAGCGTTGCCACAGAACACGTGGGACGATGCAGCCATGGCTCAGTTCTGCCGTGATACTGTGAACACAATGTGGCATTTCCATGGAGGATGTCATGTTGGGTCTGTGGTTAACCATAAATATCAGGTGAAGGGAGTTGAGGGTCTGAGGGTTGTGGATGGCTCAACATTTAAAGACGGTCCTGGAACCAACCCACAGGCCACCACTATGATGCTTGGGAGATATATGGGAATGAAGATTCTTCATGAAAGACTCTGAAGGAAGCAGCGTTTGCAGTTTGCACTGCCATATGCAATTTATTGTAGTTGCTTATTTTAATTAAGTTTCTCGAAAGTTTTTGTTTCTGAAGTACTCGTTGCCGAGTTGGCCGATGTAAACGTCACCAGTGAAGTGGTTGATATAAAGTTGAGATGTCAAAAACTATAAAA

Ace file of the UniGene sp_v1.1_unigene61018 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7U005_VITVI	-	-	2.0e-29	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	mandelonitrile lyase	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glucose-methanol-choline oxidoreductase, C-terminal	IPR007867	-	0.0	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ45

Fln msg: your sequence is shorter than subject: 121 - 291

Fln protein: MIAKLLNTRSLRRFAYATGSESCNGATTNGFHFIGPALPQNTWDDAAMAQFCRDTVNTMWHFHGGCHVGSVVNHKYQVKGVEGLRVVDGSTFKDGPGTNPQATTMMLGRYMGMKILHERL*

Protein Length: 122

Fln nts: ATGATCGCTAAACTCCTCAACACACGGTCACTGAGGAGATTTGCATATGCAACAGGTAGTGAGTCTTGTAATGGCGCCACCACTAACGGATTTCACTTCATTGGACCAGCGTTGCCACAGAACACGTGGGACGATGCAGCCATGGCTCAGTTCTGCCGTGATACTGTGAACACAATGTGGCATTTCCATGGAGGATGTCATGTTGGGTCTGTGGTTAACCATAAATATCAGGTGAAGGGAGTTGAGGGTCTGAGGGTTGTGGATGGCTCAACATTTAAAGACGGTCCTGGAACCAACCCACAGGCCACCACTATGATGCTTGGGAGATATATGGGAATGAAGATTCTTCATGAAAGACTCTGA___AGGAAGCAGCGTTTGCAGTTTGCACTGCCATATGCAATTTATTGTAGTTGCTTATTTTAATTAAGTTTCTCGAAAGTTTTTGTTTCTGAAGTACTCGTTGCCGAGTTGGCCGATGTAAACGTCACCAGTGAAGTGGTTGATATAAAGTTGAGATGTCAAAAACTATAAAA

Fln Alignment:

sp_v1.1_unigene61018___MIAKLLNTRSLRRFAYATGSESCNGATTNGFHFIGPALPQNTWDDAAMAQFCRDTVNTMWHFHGGCHVGSVVNHKYQVKGVEGLRVVDGSTFKDGPGTNPQATTMMLGRYMGMKILHER
A9NQ45_______________MISKLLNTRSLQGFASSAVNKSANGTTANGFQFIGQALPKNTRDDAAMAQFCRDTVNTMWHFHGGCHVGAVVNQRYQVNGVDSLRIVDGSTFKDGPGTNPQATTMMLGRYMGLKILQER

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
254	20		80		0.995493
491		33		66	0.997452
492		33	66		0.997452
495	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain