SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60944

Length: 1044 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60944

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lectin-related protein n=1 Tax=Citrus x paradisi RepID=Q9FQ12_CITPA	-	-	4.0e-23	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	lectin-like protein kinase	-	-	4.70181e-35	49%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Legume lectin domain	IPR001220	-	4.70181e-35	49%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	4.70181e-35	49%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	4.70181e-35	49%
Blast2go	Lectin	IPR016363	-	4.70181e-35	49%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK70

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 294 - 366

Fln protein: MVGAKEELCAVALLFPILAIASLAQSHGSYSTGFSFPSFGKDDSNQLKYMGNASYSSSGGYIDLTPSPNTTSGTSHEYSDMYNCVGRVLYREPITLWPATFTTTFTIFVKEIPLPDGLKNFNGDGLAFIIVPNDGPFLPDSSGGSLGLFDSSTDGNTTNQLAIEFDTFKNERDPNDNHVGIDINGIISNATADLGQNGIDLKSGRPIKFRIHYAGWSKTLQIYAAYADRPIRYSIILNRTIELSSTVPRLAYLGFSAATGNSFEIQRILDWNFSSVSLPESSLNIPSVGGTSGS

Protein Length: 295

Fln nts: GGTTTGGTGACGGAAATCCCAGAGAAGCAGGGCCGAAAGGATTGCATCGCGGTTGACTCAACGCATGCTCCCTTTGCCCTGTTCGACCGTGTTGTGTGTTAAGGCAAGTGATAGATTTAAGCTCTGTATAAGCAACTAGGCTCTGTATATCCAGAGTTATC_-_ATGGTCGGTGCAAAGGAGGAACTCTGTGCTGTGGCTCTTCTGTTTCCAATCCTGGCTATAGCGTCGCTTGCACAGTCCCATGGAAGTTATAGCACAGGTTTCTCTTTCCCATCATTCGGCAAGGACGACAGCAATCAGTTGAAATACATGGGAAATGCTTCCTATAGTTCTTCAGGTGGTTACATCGATCTCACTCCATCGCCGAACACTACATCCGGTACTTCCCATGAGTATTCCGACATGTATAACTGCGTCGGAAGGGTTCTTTACCGTGAACCCATCACGCTCTGGCCGGCCACATTTACGACCACCTTCACCATATTTGTCAAAGAGATCCCCCTTCCTGACGGCCTGAAGAATTTCAATGGCGACGGTCTGGCCTTCATCATAGTCCCCAACGACGGACCCTTTCTCCCAGACAGCTCCGGCGGATCTCTGGGTTTGTTCGATTCATCCACAGACGGAAACACAACGAATCAGCTAGCCATCGAATTCGACACCTTCAAGAATGAACGAGATCCGAACGACAACCACGTGGGCATAGACATCAACGGCATCATATCCAACGCGACGGCCGATCTCGGTCAAAACGGCATCGACCTCAAATCGGGGCGGCCGATAAAGTTTCGAATCCATTACGCTGGCTGGAGCAAAACCCTGCAAATATATGCCGCGTATGCAGACCGACCAATTCGTTACTCCATCATCTTGAACCGCACAATCGAGCTATCAAGCACCGTTCCGCGATTAGCGTACCTGGGATTCTCGGCTGCAACCGGGAATTCTTTCGAGATTCAGCGTATTTTGGACTGGAATTTCAGTTCCGTTAGCCTGCCCGAGTCGTCTCTGAACATACCCTCTGTAGGCGGAACGAGTGGATCCA

Fln Alignment:

sp_v1.1_unigene60944___TGFSFPSFGKDDSNQLKYMGNASYSSSGGYIDLTPSPNTTSGTSHEYSDMYNCVGRVLYREPITLWPAXXXXXXXIFVKEIPLPDGLKNFNGDGLAFIIVPNXXXXXXXXXXXXXXXXXXXXXXNTTNQLAIEFDTFKNER--DPNDNHVGIDINGIISNATADLGQNGIDLKSGRPIKFRIHYAGWSKTLQIYAAYADRPIRYSIILNRTIELSSTVPRLAYLGFSAATGNSFEIQRILDWNFSS
A9NK70_______________TSFSFPNFNVKPSSEITLLGDAEVIADG------ESSVRICGSSPRTA------GRLMYGRPVRLLQPLGPRSSVSFSSYFSF--SMSSGNGDGLAFVILPRGNPLDGQWFGLSSAKGSVSRIPNL---FAVEFDSAQNKEVMDINANHVGIDIESLISSKTADVSEIKLILNDGTQLHAWIDYDARSKVLEVRLSKSGLIKPSAPLISHSVDLSGLWKDEMYVGISSSSGDSSQNNVVYSWSFTS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
660	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain