SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60779

Length: 828 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene60779 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Copine III-like protein (Fragment) n=1 Tax=Picea abies RepID=B2KZF7_PICAB	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	rglg2 (ring domain ligase2) ubiquitin-protein ligase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	cytokinin metabolic process	GO:0009690	Biological Process	71%
Blast2go	auxin metabolic process	GO:0009850	Biological Process	71%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	71%
Blast2go	Copine	IPR010734	-	71%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	71%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
413		16	16		0.988813
414		16		16	0.988813
415		14	85		0.993533
420	16	83			0.994512
421		16		83	0.994512
425		16		83	0.994512
426		16	83		0.994512
430		83	16		0.994512
432		16	83		0.994512
433	16			83	0.994512
434		16		83	0.994512
438		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain