SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60769

Length: 443 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene60769
CGTCGTGACCTTGGCTGTCATGGGGGTGATTATTCTGGAAACCTGCAGGCCTTCGCCATTTTGAAAGCGGGTGCGAAGAGGCCGTTGCAGGGGACAAATTTAACTCATCCAACGCCGGCCACTTTTAACGCTCGTTGCAACATTTCTGATCTCCACAAATCTGCCTTCCACTTTGATTAAGTGGATGCTCGGGTTTCTCTTTCGTCATCAGCTCCATCTGCTTTCGCCATGAGGAACCCTGCACGCAATCACAATTTTGCAAGGAATGCTGAGCAGATAGGCTATCAAAATTCCAGGGTATATTTATCAGCTGAAGAAGCAGCAGCTGCTGAAGAAAGCTTGTCGGTCTACTGCAAGCCTGTGGAACTCTACAACATTCTTCAACGTCGAGCTTTAAGACATCCCTTATTTCTTCAACGATGTTTGCGGTACAAAATACAAGC

Ace file of the UniGene sp_v1.1_unigene60769

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to embryonic flower 2	-	-	1.0e-14	61%
FL-Next	Isoform 2 of Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2	-	-	0.0	65%
Blast2go	embryonic flower 2	-	-	2.71805e-14	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	2.71805e-14	85%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	2.71805e-14	85%
Blast2go	protein binding	GO:0005515	Molecular Function	2.71805e-14	85%
Blast2go	nucleus	GO:0005634	Cellular Component	2.71805e-14	85%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8L6Y4-2

Fln msg: Distance to subject end: 550 aas, your sequence is shorter than subject: 71 - 626

Fln protein: MRNPARNHNFARNAEQIGYQNSRVYLSAEEAAAAEESLSVYCKPVELYNILQRRALRHPLFLQRCLRYKIQ

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGGTGATTATTCTGGAAACCTGCAGGCCTTCGCCATTTTGAAAGCGGGTGCGAAGAGGCCGTTGCAGGGGACAAATTTAACTCATCCAACGCCGGCCACTTTTAACGCTCGTTGCAACATTTCTGATCTCCACAAATCTGCCTTCCACTTTGATTAAGTGGATGCTCGGGTTTCTCTTTCGTCATCAGCTCCATCTGCTTTCGCC_-_ATGAGGAACCCTGCACGCAATCACAATTTTGCAAGGAATGCTGAGCAGATAGGCTATCAAAATTCCAGGGTATATTTATCAGCTGAAGAAGCAGCAGCTGCTGAAGAAAGCTTGTCGGTCTACTGCAAGCCTGTGGAACTCTACAACATTCTTCAACGTCGAGCTTTAAGACATCCCTTATTTCTTCAACGATGTTTGCGGTACAAAATACAAGC

Fln Alignment:

sp_v1.1_unigene60769___ARNAEQIGYQNSRVYLSXXXXXXXXXSLSVYCKPVELYNILQRRALRHPLFLQRCLRYKIQ
Q8L6Y4-2_____________SRSTEQMCHEDSRLRISEEEEIAAEESLAAYCKPVELYNIIQRRAIRNPLFLQRCLHYKIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain