SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60766

Length: 479 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene60766
CGTCGTGACCTTGGCTGTCACTCAATGCACAGTCGACGACTCATCAAGAGGTTGGCAATTTCCGTCGTCCAACGCCAAAACTGGAAAACGTTGACGGTAGTAAAAATATTGTCTGACGGACGGACATACGGATTTTGTGAAACTCTGGGAGGGCGATCGACCATCTCCCAGACTGCACAGCAATCTCAAGCTTCGCCATTCATTCTCCGGGGAATCGAACAGGCGATTTGATGATGATCAATTCGTGGCGATAAACCAGCGGATTTACACGCGTGGAATGCAATTAACGGCATCGCCCCCTTCACTGCTAGGGTTAATCGGCTGATCTGCAGCTGTTTTAAAGATGGGAATGCTGTTTTCCAGACTGTTTGCTTCACTCTTCGGAGACAAGGAGGCTCGCATTCTAGTCCTCGGCCTCGACAATGCCGGGAAAACCACCATTCTCTATCGCCTGCAGATGGGAGAAGTGGTTTCTACAG

Ace file of the UniGene sp_v1.1_unigene60766

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP-ribosylation factor, arf, putative; K07942 ADP-ribosylation factor-like 1	-	-	2.0e-14	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	adp-ribosylation factor 3	-	-	2.17576e-16	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	vegetative phase change	GO:0010050	Biological Process	2.17576e-16	99%
Blast2go	abaxial cell fate specification	GO:0010158	Biological Process	2.17576e-16	99%
Blast2go	biological regulation	GO:0065007	Biological Process	2.17576e-16	99%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	2.17576e-16	99%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.17576e-16	99%
Blast2go	protein binding	GO:0005515	Molecular Function	2.17576e-16	99%
Blast2go	Golgi stack	GO:0005795	Cellular Component	2.17576e-16	99%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.17576e-16	99%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMU1

Fln msg: Distance to subject end: 137 aas, your sequence is shorter than subject: 45 - 182

Fln protein: MGMLFSRLFASLFGDKEARILVLGLDNAGKTTILYRLQMGEVVST

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGCACAGTCGACGACTCATCAAGAGGTTGGCAATTTCCGTCGTCCAACGCCAAAACTGGAAAACGTTGACGGTAGTAAAAATATTGTCTGACGGACGGACATACGGATTTTGTGAAACTCTGGGAGGGCGATCGACCATCTCCCAGACTGCACAGCAATCTCAAGCTTCGCCATTCATTCTCCGGGGAATCGAACAGGCGATTTGATGATGATCAATTCGTGGCGATAAACCAGCGGATTTACACGCGTGGAATGCAATTAACGGCATCGCCCCCTTCACTGCTAGGGTTAATCGGCTGATCTGCAGCTGTTTTAAAG_-_ATGGGAATGCTGTTTTCCAGACTGTTTGCTTCACTCTTCGGAGACAAGGAGGCTCGCATTCTAGTCCTCGGCCTCGACAATGCCGGGAAAACCACCATTCTCTATCGCCTGCAGATGGGAGAAGTGGTTTCTACAG

Fln Alignment:

sp_v1.1_unigene60766___MGMLFSRLFASLFGDKEARILVLGLDNAGKTTILYRLQMGEVVST
B8LMU1_______________MGMLFSRLFASLFGDKEARILVLGLDNAGKTTILYRLQMGEVVST

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
149		10	90		0.903134
151			90	10	0.903134
152	88	11			0.923646
154			88	11	0.923695
156	11	88			0.923646
157		11	88		0.923646
158	88	11			0.923646
160		87		12	0.992554
162	87		12		0.992554
164		87		12	0.992554
165	87		12		0.992554
168	12			87	0.992554
172	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain