SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60688

Length: 477 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

>sp_v1.1_unigene60688
ATGGGAACGCAGAGTACATGGGGACCCATTCAATGCGTTGGTATTCATCCTTCTGCAACCTCGCGTCGGTTGACCGTTTCATCTCCTTCAAAAACCTTGTGCAAGGTAACTGGACCAACTGCTCAGGGAGGTCTTAGAACCATAATTCAATCTCCAGTGGGCAGATCTGACGTTAGAAGTGTAAGAATCAGGGCCATGTCAGAGAGCAAAGTGGGGACTAAAGTAATGGAGAGTATGGGAATTCAGATTGAGAGTAATCCTGCTGAAAGTCGCCTTTCAGATGGCTACAATGACTATGTTGAGATTGGACCCGCAGATTTGGTTGTGTTCCCTAAGGGAATGAAATGCACCTGGGAGGTGTCTGAAGCAGTTGATAAGCATTACAGCTTTGACTAGCTGCATATTGTGTCTCAAGTCTGGTAGTTATTGTATATTGTCCCTGACGTATATATCTAACTGCATTTCACATTAGAGCCA

Ace file of the UniGene sp_v1.1_unigene60688

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	enzyme of the cupin superfamily	-	-	2.0e-10	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	unknown [Picea sitchensis]	-	-	1.03556e-42	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF861, cupin-3	IPR008579	-	1.03556e-42	55%
Blast2go	RmlC-like jelly roll fold	IPR014710	-	1.03556e-42	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK05

Fln msg: atg_distance in limit (1-15): atg_distance = 2, your sequence is shorter than subject: 132 - 169

Fln protein: MGTQSTWGPIQCVGIHPSATSRRLTVSSPSKTLCKVTGPTAQGGLRTIIQSPVGRSDVRSVRIRAMSESKVGTKVMESMGIQIESNPAESRLSDGYNDYVEIGPADLVVFPKGMKCTWEVSEAVDKHYSFD*

Protein Length: 133

Fln nts: _-_ATGGGAACGCAGAGTACATGGGGACCCATTCAATGCGTTGGTATTCATCCTTCTGCAACCTCGCGTCGGTTGACCGTTTCATCTCCTTCAAAAACCTTGTGCAAGGTAACTGGACCAACTGCTCAGGGAGGTCTTAGAACCATAATTCAATCTCCAGTGGGCAGATCTGACGTTAGAAGTGTAAGAATCAGGGCCATGTCAGAGAGCAAAGTGGGGACTAAAGTAATGGAGAGTATGGGAATTCAGATTGAGAGTAATCCTGCTGAAAGTCGCCTTTCAGATGGCTACAATGACTATGTTGAGATTGGACCCGCAGATTTGGTTGTGTTCCCTAAGGGAATGAAATGCACCTGGGAGGTGTCTGAAGCAGTTGATAAGCATTACAGCTTTGACTAG___CTGCATATTGTGTCTCAAGTCTGGTAGTTATTGTATATTGTCCCTGACGTATATATCTAACTGCATTTCACATTAGAGCCA

Fln Alignment:

sp_v1.1_unigene60688___IQCVGIHPSATSRRLTVSSPSKTLCKVTGPTAQGGLRTIIQSPVGRSDVRSVRIRAMSESKVGTKVMESMGIQIESNPAESRLS--------------------------------------DGYNDYVEIGPADLVVFPKGMKCTWEVSEAVDKHYSF
A9NK05_______________VQCVGIS-SATPRRAPVSSSSKTLCKVTGVAVQGGLRLISQSRVGRSDVKSVIIRAMSESKLETKVMENMGIQIESNPAEGRLSELKVRSWPKWGCPPSKFPWTYTATETCYLLEGRVKVYPDGYNDYVEIGPGDLVVFPKGMKCTWEVSEAVDKHYSF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
24	85		14		0.993533
25	14			42	1.0
26		57	42		1.0
27		57	42		1.0
28		57	42		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain