SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60679

Length: 677 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60679

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isoamylase-type starch debranching enzyme ISO2 n=3 Tax=Andropogoneae RepID=B6UFP5_MAIZE	-	-	4.0e-20	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	isoamylase-type starch debranching enzyme iso2	-	-	0.0	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isoamylase.	EC:3.2.1.68	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	amylopectin biosynthetic process	GO:0010021	Biological Process	0.0	62%
Blast2go	isoamylase activity	GO:0019156	Molecular Function	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	0.0	62%
Blast2go	Alpha amylase	IPR015902	-	0.0	62%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
284			20	80	0.995499
288		80	20		0.995499
289	80			20	0.9955
290	80		20		0.9955
293		20	80		0.995499
295	75			25	0.996473
296			75	25	0.996473
297		80	20		0.995505
298		80	20		0.995505
300		80		20	0.995505
301	75		25		0.996473
303	75	25			0.996473
304	25		75		0.996473
307		25	75		0.996473
308	33			66	0.997452
363			33	66	0.997476
369			75	25	0.996474
372			25	75	0.996473
391	50			50	1.0
402		50		50	1.0
413		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain