SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60656

Length: 903 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene60656 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	kinase, putative (EC:2.7.11.11)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	75%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	75%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	75%
Blast2go	Protein kinase-like domain	IPR011009	-	75%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	75%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 16 aas, your sequence is shorter than subject: 262 - 431

Fln protein: RRDLGCHSGTLAQHLQRERGEGLNWPTRISIATETAKAIAYLHSTMTPPIYHRDIKSSNILLDYDFNAKVADFGLSRLGLLDGSHISTIPQGTPGYLDPEYHQNFHLSDKSDVYSFGVVLIELITAMKPVDFSRDKKEVNLASLAMSKIGSNCLDEIIDPFLQVHKQPLLRGLVQRVAEVAFRCLSFDKDARPSMIEVAEELLLINKDCMHVRTPSPQEIFKSSFESKFLQKVSMSPSSIQPPWTSDGSSLSETLPNTIKH*

Protein Length: 263

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCACCTTGGCACAGCATCTGCAACGAGAGAGGGGCGAAGGTTTAAATTGGCCAACACGAATTAGTATTGCTACAGAAACTGCAAAAGCCATTGCATACCTACATTCGACAATGACTCCACCAATATATCATCGCGATATCAAGTCCAGTAATATTCTTCTAGATTATGATTTCAATGCAAAAGTTGCAGATTTTGGACTTTCAAGGCTAGGACTTCTAGATGGATCCCATATCTCCACTATTCCTCAAGGTACCCCTGGGTACCTTGATCCAGAGTATCATCAGAACTTCCATCTCTCAGATAAGAGTGATGTGTACAGCTTTGGTGTGGTTCTAATTGAATTGATTACAGCTATGAAGCCAGTCGATTTTTCTCGTGACAAAAAAGAGGTTAATCTTGCTTCTCTTGCCATGTCAAAGATTGGAAGCAACTGCCTTGATGAAATTATTGATCCCTTCCTCCAGGTTCACAAGCAACCTTTGCTCCGGGGACTGGTGCAAAGAGTTGCTGAGGTTGCATTTAGATGTTTGTCATTTGACAAAGATGCTAGACCTTCTATGATAGAAGTTGCAGAGGAACTTCTACTAATCAACAAAGATTGCATGCATGTGAGGACCCCCTCACCACAGGAGATCTTCAAATCAAGCTTTGAAAGTAAATTTCTGCAGAAGGTTAGCATGTCCCCCAGCTCTATTCAACCACCTTGGACAAGCGATGGTAGCTCATTGTCGGAGACTCTTCCAAATACAATCAAACATTGA___TATATTTAACTGATTTCTTGGACTTTAGGCATATCATGTGTAATTTTGAGGTGTTTATAAGCATAAGAAGAAGCATTGTGTTGGTTTCCTTCTGTACTTTTCTTGATATACTGTTTA

Fln Alignment:

sp_v1.1_unigene60656___GTLAQHLQRERGEGLNWPTRISIATETAKAIAYLHSTMTPPIYHRDIKSSNILLDYDFNAKVADFGLSRLGLL-DGSHISTIPQGTPGYLDPEYHQNFHLSDKSDVYSFGVVLIELITAMKPVDFSRDKKEVNLASLAMS-KIGSNCLDEIIDPFLQVHKQPLLRGLVQRVAEVAFRCLSFDKDARPSMIEVAEELLLINKDCMHVRTP--SPQEIFKSSFESKFLQKVSMSPSSIQP
B8LKY1_______________GSLENHLFRKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYS--IKG-AQKVAQLAHYCLSRDPKARPTMNDVVE-----------VLTPLLSLKDTASSSFNYQALQSQHQSQHSHMP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
722	33			66	0.997456
748	33			66	0.997464
750	66		33		0.997464
752	66	33			0.997464
753	33			66	0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain