SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60626

Length: 789 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene60626 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450, putative n=2 Tax=Arabidopsis RepID=Q9C788_ARATH	-	-	2.0e-29	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	oxygen binding protein	-	-	4.09434e-29	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alkane 1-monooxygenase.	EC:1.14.15.3	-	4.09434e-29	87%

Source	KEGGs	Term	e value	Identity
Blast2go	Fatty acid metabolism	00071	4.09434e-29	87%
Blast2go	Arachidonic acid metabolism	00590	4.09434e-29	87%
Blast2go	Retinol metabolism	00830	4.09434e-29	87%
Blast2go	Metabolic pathways	01100	4.09434e-29	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	4.09434e-29	87%
Blast2go	binding	GO:0005488	Molecular Function	4.09434e-29	87%
Blast2go	alkane 1-monooxygenase activity	GO:0018685	Molecular Function	4.09434e-29	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	4.09434e-29	87%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
474	60	40			1.0
633			75	25	0.996473
634	25		75		0.996473
637	25		75		0.996473
640		80		20	0.995493
641		80		20	0.995493
642	20		80		0.995497
643	20		80		0.995497
645	80		20		0.995498
646		80		20	0.995498
648	80		20		0.9955
649	80		20		0.9955
769			33	66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain