SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60616

Length: 844 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene60616 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dead box ATP-dependent RNA helicase, putative; K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]	-	-	2.0e-23	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	dead box atp-dependent rna	-	-	1.08596e-26	97%

Source	ECs	Term	Type	e value	Identity
AutoFact	RNA helicase.	EC:3.6.4.13	-	2.0e-23	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	1.08596e-26	97%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Separated hits, possible frame ERROR between 165 and 449, query STOP codon too far from subject stop. Distance to subject end: 34 aas, putative chimeric sequence, your sequence is shorter than subject: 230 - 593

Fln protein: KKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEAGQRVNPELAAMTRRITKRNSV*

Protein Length: 231

Fln nts: AAGAAGGGATGTGATCAGGTTACCAAACAACTTCGCATGGATGGTTGGCCGGCATTATCCATCCACGGTGATAAAAGCCAGGCCGAAAGGGACTGGGTGTTGGGAGAGTTTAAGGCTGGCAAAAGCCCTATCATGACTGCTACGGATGTTGCTGCCCGTGGTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGATGTTAAGGATATAAAATGTGTCATTAACTATGACTTTCCTGGCTCACTGGAGGATTATGTACATCGTATTGGACGTACTGGTAGAGCTGGTGCAAAGGGTACAGCATATTCATTTTTTACTGCTGCAAATGGAAGATTTGCAAGGGAATTGGTTGGCATTCTTCAAGAAGCTGGGCAGCGTGTTAATCCTGAATTGGCTGCAATGACTCGCAGAATTACCAAGAGGAATAGTGTTTGAGCCTGAAATAACATTACGATTTCCATATCCTCTTGGTAATTCTGCGCACAGGCAATGGTAGAGTTAATACAATTGCGACTCTGTTAGGGAGGACATTCAAGAACAATCTGATATTTCTGTATCATAGTATTTTTTGAAGACTCGTTGAAGCTATAT

Fln Alignment:

sp_v1.1_unigene60616___KKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDVKDIKCVINYDFPGSLEDYVHRIXXXXXXXXXXXAYSFFTAANGRFARELVGILQEAGQRVNPELAAMTR
C0PQ26_______________KKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEAGQRVNPELAAMTR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
621	22		77		0.999999
685		83		16	0.994512
686	83		16		0.994512
687	83		16		0.994512
689		83	16		0.994512
691	83			16	0.994512
693	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain