SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60603

Length: 485 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene60603
CGTCGTGACCTTGGCTGTCACTCATTCTCAGGTGCATCAATTGAACCCTGCACGTTCATTTGGGCCGGCGTTTGTTATGTGGCAGTGGAGAGACCATTGGGTATATTGGGTTGGTCCTCTGGTTGGAGGCGGTCTAGCAGCTGCCCTATATGAGAATTTCTTCATCATTCGAACGTACGAGCCTCTCCCCGCCTCGCTTTGAGGATACCAAGGAACTAAATGAAACCTACCAGGCTAGCATCCTTCATAAAATAACAGCGCGTGTTTGCTTGAGTAAATAAATGGCCCTAAAGTCCCACCATATCAGCGCGTGTTTGCTTGAGTAAATAAATGGCCCTAAAGTCCCACCATATTCACGGTTAGAACCAGAATGACAGGTGTGAGATCATGCTGTAAAATATGTATGTTCCTGGTGTTTTATGTGGTGAAAACTGTGTTAGACTCTCCTCATCATGTACATATATATCTTTGACTTGCACATATAA

Ace file of the UniGene sp_v1.1_unigene60603

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tonoplast intrinsic protein, putative n=1 Tax=Ricinus communis RepID=B9RS20_RICCO	-	-	1.0e-13	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	tonoplast intrinsic	-	-	1.70206e-16	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major intrinsic protein	IPR000425	-	1.70206e-16	86%
Blast2go	Aquaporin-like	IPR023271	-	1.70206e-16	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSL7

Fln msg: your sequence is shorter than subject: 67 - 250

Fln protein: VVTLAVTHSQVHQLNPARSFGPAFVMWQWRDHWVYWVGPLVGGGLAAALYENFFIIRTYEPLPASL*

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCAGGTGCATCAATTGAACCCTGCACGTTCATTTGGGCCGGCGTTTGTTATGTGGCAGTGGAGAGACCATTGGGTATATTGGGTTGGTCCTCTGGTTGGAGGCGGTCTAGCAGCTGCCCTATATGAGAATTTCTTCATCATTCGAACGTACGAGCCTCTCCCCGCCTCGCTTTGA___GGATACCAAGGAACTAAATGAAACCTACCAGGCTAGCATCCTTCATAAAATAACAGCGCGTGTTTGCTTGAGTAAATAAATGGCCCTAAAGTCCCACCATATCAGCGCGTGTTTGCTTGAGTAAATAAATGGCCCTAAAGTCCCACCATATTCACGGTTAGAACCAGAATGACAGGTGTGAGATCATGCTGTAAAATATGTATGTTCCTGGTGTTTTATGTGGTGAAAACTGTGTTAGACTCTCCTCATCATGTACATATATATCTTTGACTTGCACATATAA

Fln Alignment:

sp_v1.1_unigene60603___LNPARSFGPAFVMWQWRDHWVYWVGPXXXXXXXXXXYENFFIIRTYEPL
C0PSL7_______________MNPARSFGPAFVMWEWRDHWVYWVGPLVGGGLAGALYENFFIIRTYEPL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
117	25	75			0.996474
118		75		25	0.996474
121		75	25		0.996473
122			25	75	0.996473
150		85		14	0.993538
151			14	85	0.993536
152	71		14	14	0.984352
153		16	16	66	0.988813
154	71	14	14		0.984352
157	83			16	0.994512
158		33	66		1.0
159	85	14			0.993536
160	71	14		14	0.984352
164			16	83	0.994512
165			16	83	0.994512
325			83	16	0.99452
329		20	80		0.995493
360	80	20			0.995493
450		75	25		0.996473
476		20		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain