SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60580

Length: 238 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene60580
CGTCGTGACCTTGGCTGTCACTCAACGTCGTGACCTTGGCTGTCACTCGTTCACTTTTTACTGGCCTGAACAAAGATCAAGTTGCATTTATGACTGCAGAGTACCATATTTATTTGACTTCTGATGGGAGGATAAGTATGGCAGGTCTCAGCTCTAAAACAGTCCCACATCTTGCAGATGCTATCCATGCTGCTGTTCTCCGCCGTGGTTAGCAGCATGGTTTTCCATACAATAACTT

Ace file of the UniGene sp_v1.1_unigene60580

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartate aminotransferase n=2 Tax=Picea sitchensis RepID=C0PSV4_PICSI	-	-	5.0e-20	96%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	aspartate aminotransferase	-	-	9.50667e-20	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate transaminase.	EC:2.6.1.1	-	9.50667e-20	92%

Source	KEGGs	Term	e value	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	9.50667e-20	92%
Blast2go	Cysteine and methionine metabolism	00270	9.50667e-20	92%
Blast2go	Arginine and proline metabolism	00330	9.50667e-20	92%
Blast2go	Tyrosine metabolism	00350	9.50667e-20	92%
Blast2go	Phenylalanine metabolism	00360	9.50667e-20	92%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	9.50667e-20	92%
Blast2go	Carbon fixation in photosynthetic organisms	00710	9.50667e-20	92%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	9.50667e-20	92%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	9.50667e-20	92%
Blast2go	Biosynthesis of phenylpropanoids	01061	9.50667e-20	92%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	9.50667e-20	92%
Blast2go	Biosynthesis of plant hormones	01070	9.50667e-20	92%
Blast2go	Metabolic pathways	01100	9.50667e-20	92%
Blast2go	Biosynthesis of secondary metabolites	01110	9.50667e-20	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	9.50667e-20	92%
Blast2go	copper ion binding	GO:0005507	Molecular Function	9.50667e-20	92%
Blast2go	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	9.50667e-20	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.50667e-20	92%
Blast2go	cytosol	GO:0005829	Cellular Component	9.50667e-20	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 70 - 424

Fln protein: S*PWLSLNVVTLAVTRSLFTGLNKDQVAFMTAEYHIYLTSDGRISMAGLSSKTVPHLADAIHAAVLRRG*

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGTCGTGACCTTGGCTGTCACTCGTTCACTTTTTACTGGCCTGAACAAAGATCAAGTTGCATTTATGACTGCAGAGTACCATATTTATTTGACTTCTGATGGGAGGATAAGTATGGCAGGTCTCAGCTCTAAAACAGTCCCACATCTTGCAGATGCTATCCATGCTGCTGTTCTCCGCCGTGGTTAG___CAGCATGGTTTTCCATACAATAACTT

Fln Alignment:

sp_v1.1_unigene60580___FTGLNKDQVAFMTAEYHIYLTSDGRISMAGLSSKTVPHLADAIHAAVLRRG
B8LKC5_______________FTGLNKDQVSFMTAEYHIYLTSDGRISMAGLSSKTVPHLADAIHAAVLRLG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
63		25		75	0.996483
65			75	25	0.996481
67		75	25		0.996481
71	75	25			0.996477
73	75			25	0.996478
74	66			33	0.997452
75	66		33		0.997452
77	66	33			0.997452
79		66	33		0.997452
80	66			33	0.997452
81	66	33			0.997452
82	33		66		0.997452
83		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain