SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60560

Length: 1158 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60560

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=1 Tax=Picea abies RepID=Q5W5I3_PICAB	-	-	76%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	76%
Blast2go	peroxidase 72	-	-	79%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	79%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	79%
Blast2go	Haem peroxidase	IPR010255	-	79%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	79%
Blast2go	Peroxidase, active site	IPR019794	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q5W5I3

Fln msg:

Fln protein: MARIKRTHCLTLQFHSVLIMGATLISVMVLDAKSCHGLSLHFYDTSCPEVGEIIKSVVKDAVDKEARMAASLLRLHFHDCFVKGCDASVLLDDTANFTGEKTAKPNQNSLRGFEVVDEIKAQLEKACPGVVSCADILAVAARDSVVITGGPFWEVQLGRRDSRSASLQGANSNLPAPSSTHQTLETKFKLQGLDVVDLVALSGAHTIGLARCSSFKARLYNQTGINPAATINGPYLQQLRTFCPQTGTDNNQTTSLDPITPIKFDVNYYENLVAGRGLLTSDEVLYSTKGSLTPGLVQSYTTNANAFFKQFAASMIKMGNISPLTGSSGEIRENCRKMN*

Protein Length: 341

Fln nts: ATGGGGAAGATATAAACTCCTGCATTATAAGGAAATAGTTGATTTTTGTA_-_ATGGCACGGATCAAACGTACTCACTGCCTTACACTGCAGTTTCATTCTGTGCTGATCATGGGAGCCACATTGATTTCTGTAATGGTACTGGATGCTAAGAGCTGTCACGGTCTGAGTCTCCATTTCTATGACACATCCTGTCCCGAGGTGGGGGAAATAATTAAATCTGTAGTAAAAGATGCTGTGGACAAGGAAGCTAGAATGGCTGCTTCGTTGCTACGCTTACATTTTCACGACTGCTTTGTTAAGGGCTGCGACGCATCGGTTCTGCTTGATGACACTGCCAACTTCACGGGAGAGAAGACAGCAAAACCCAACCAGAATTCGCTCAGAGGCTTTGAAGTAGTAGATGAAATAAAAGCCCAACTGGAGAAAGCATGCCCGGGGGTGGTCTCCTGCGCTGATATTCTTGCTGTGGCAGCTCGTGATTCAGTAGTCATTACTGGGGGGCCGTTTTGGGAAGTTCAATTAGGGAGGAGGGACTCTAGAAGTGCAAGCCTGCAAGGTGCAAACAGCAACCTTCCCGCACCCAGCTCAACTCATCAGACACTGGAAACCAAATTTAAACTCCAAGGTCTCGATGTGGTCGATCTGGTCGCTCTATCAGGCGCCCATACGATAGGTTTAGCGCGATGCTCAAGCTTCAAGGCGAGGCTGTACAATCAGACTGGAATTAACCCTGCCGCGACAATTAACGGGCCATACCTGCAGCAGCTGCGGACCTTCTGTCCACAAACTGGCACCGACAATAATCAAACCACGTCATTGGATCCGATCACTCCTATAAAATTCGACGTAAACTACTACGAGAACCTGGTAGCGGGAAGAGGGCTGCTGACTTCAGATGAGGTTCTGTATTCCACGAAAGGAAGTTTAACGCCGGGTTTGGTGCAGTCCTACACAACCAACGCGAATGCATTCTTCAAGCAATTCGCTGCATCAATGATAAAGATGGGCAACATCAGTCCTCTCACCGGGTCTAGTGGTGAAATTAGGGAGAACTGTCGTAAAATGAATTGA___CAAACCACCTTGTTGCTGCCTGCGCCTGATGTGTAGTAGTACTCTCAGCCTTCTTTTCATGTAACAAATGGAAACGTCCACCTCGCAC

Fln Alignment:

sp_v1.1_unigene60560___MARIKRTHCLTLQFHSVLIMG-ATLISVMVLDAKSCHGLSLHFYDTSCPEVGEIIKSVVKDAVDKEARMAASLLRLHFHDCFVKGCDASVLLDDTANFTGEKTAKPNQNSLRGFEVVDEIKAQLEKACPGVVSCADILAVAARDSVVITGGPFWEVQLGRRDSRSASLQGANSNLPAPSSTHQTLETKFKLQGLDVVDLVALSGAHTIGLARCSSFKARLYNQTGINPAATINGPYLQQLRTFCPQTGTDNNQTTSLDPITPIKFDVNYYENLVAGRGLLTSDEVLYSTKGSLTPGLVQSYTTNANAFFKQFAASMIKMGNISPLTGSSGEIRENCRKMN
Q5W5I3_______________MARIKHSPGLTLQFQSVLITAVALMLWIQTLDAQSCNGLSHHFYYKSCPKAQAIIKSMVEDAVKKEARIAASLLRLHFHDCFVKGCDASLLLDDNASFTGEKTAIPNKNSLRGFEVVDKIKSNLEKACPGVVSCADILAVAARDSVAISGGPFWKVLLGRRDSRSASKSGANEDLPAPNSTHQTLETKFKLQGLNVVDLVALSGAHTIGLARCASFKQRLYNQTGNKPDQTLDTTYLKQLRTVCPQTGTDNNQTRPFDPVSPTKFDVNYYKNVVAGKGLLNSDEILYSTKGSRTAGFVKYYTTNTHAFFKQFAASMIKMGNISPLTGFHGEIRKNCRRIN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
749	14		85		0.993533
766	11	88			0.923564
770		87	12		0.992554
781		12		87	0.992554
829	85		14		0.993533
960		80	20		0.995493
1081		75		25	0.996476
1088		50		50	1.0
1102		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain