SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60542

Length: 505 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60542

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	gpm447; LOC100282946; K02983 small subunit ribosomal protein S30e	-	-	4.0e-20	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	40s ribosomal protein s30	-	-	3.90613e-21	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	3.90613e-21	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	3.90613e-21	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S30	IPR006846	-	3.90613e-21	95%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
59			20	80	0.995505
60		20	60		0.992561
61		20	80		0.995495
62			80	20	0.995495
63			80	20	0.995495
113		83		16	0.994516
115	83		16		0.994513
117	83		16		0.994513
118	16	83			0.994516
122		16		83	0.994519
123	80		20		0.995493
124		20		80	0.995493
125	20			80	0.995493
238			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain