SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60519

Length: 411 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene60519
ATGGGAAGTATGGAATTGTTGACATCTTTGGAGTACTTGTCTGCAGAGGGATGTACACAGCGTCGTGACCTTGGCTGTCACTCAAGCAGGCCACAAAACTTCAGAGGTTAAATGTTATTGGGTGCGCACAGTTAGATGAACTGCCAAGTATGGAATTATTGACATCTTTGGAGTCCTTGTCGGCAAGTGGATGTTGGACGTTGAAGAACATACTGGGCTTGTTGCAGTGTACACAGCTTCGAATGCTAGATCTCTATGGGTGCTGTGAGTTAGAAGAGGTGGAATGTGTTGAACATTGTACGTGGTTGGAGGGGCTTGACCTCCGTCGGTGCCCCAAATTACAATGTCCAGTCTGGGAGTAGGCGTCGCTGGCCATTTAAAATGAAAACAAAAGAGGCGGTCATAAGACAC

Ace file of the UniGene sp_v1.1_unigene60519

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	9.0e-07	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	unknown [Picea sitchensis]	-	-	2.3193e-12	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Z7

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 98 - 117

Fln protein: PWLSLKQATKLQRLNVIGCAQLDELPSMELLTSLESLSASGCWTLKNILGLLQCTQLRMLDLYGCCELEEVECVEHCTWLEGLDLRRCPKLQCPVWE*

Protein Length: 99

Fln nts: ATGGGAAGTATGGAATTGTTGACATCTTTGGAGTACTTGTCTGCAGAGGGATGTACACAGCGTCGTGACCTTGGCTGTCACTCAAGCAGGCCACAAAACTTCAGAGGTTAAATGTTATTGGGTGCGCACAGTTAGATGAACTGCCAAGTATGGAATTATTGACATCTTTGGAGTCCTTGTCGGCAAGTGGATGTTGGACGTTGAAGAACATACTGGGCTTGTTGCAGTGTACACAGCTTCGAATGCTAGATCTCTATGGGTGCTGTGAGTTAGAAGAGGTGGAATGTGTTGAACATTGTACGTGGTTGGAGGGGCTTGACCTCCGTCGGTGCCCCAAATTACAATGTCCAGTCTGGGAGTAG___GCGTCGCTGGCCATTTAAAATGAAAACAAAAGAGGCGGTCATAAGACAC

Fln Alignment:

sp_v1.1_unigene60519___LKQATKLQRLNVIGCAQLDXXXXXXXXXXXXXXXXXGCWTLKNILGLLQCTQLRMLDLYGXXXXXXXXXXXXXTWLEGL-DLRRCPKLQCPVWE
D5A9Z7_______________LEQATKLQRLDVGGCSELDELPSMETLVSLECLWAEGCVKLKCIRGLEQCRQLRTLSVTGCSELEEVEGVEHCTWLEKLADYDGCHKLQCPVWE

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
64		66	33		0.997476
65	33		66		0.997476
66	33			66	0.997476
69		66	33		0.997476
70		66	33		0.997476
71	33			66	0.997476
76			33	66	0.997461
78			33	66	0.997457
79		66	33		0.997457
80	66			33	0.997456
81		66		33	0.997456
83		66	33		0.997458
84	66		33		0.997459
245		25		75	0.996473
250	25		75		0.996473
253		80		20	0.995495
276	66		33		1.0
316	33		66		1.0
318		66	33		1.0
321	33		66		1.0
327		66		33	1.0
329		16		83	0.994512
332		33	66		1.0
345	20	80			0.995493
354		20	80		0.995496
369			50	50	1.0
376	33	66			0.997454
378	66		33		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain