SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60488

Length: 1129 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60488

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=1 Tax=Picea abies RepID=Q4W2V5_PICAB	-	-	88%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	94%
Blast2go	peroxidase-like protein	-	-	86%

Source	InterPros	Term	Type	Identity
Blast2go	Plant peroxidase	IPR000823	-	86%
Blast2go	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	86%
Blast2go	Haem peroxidase	IPR010255	-	86%
Blast2go	Peroxidases heam-ligand binding site	IPR019793	-	86%
Blast2go	Peroxidase, active site	IPR019794	-	86%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q4W2V5

Fln msg: W1: There is no M at the beginning,

Fln protein: FFGHEGSRVHCCGVLCICSINYAAYGQLTSTFYSKVCPTALSIVKAAVTKAVNNEKRMGASLLRLHFHDCFVNGCDGSILLDDNSTFTGEKTAGPNANSVRGFDVIDTIKTQVEAACSGVVSCADILAIAARDSVVQLGGPTWTVLLGRRDSTTASLSAANNNIPSPASNLSTLISSFTAHGLSTKDLVALSGAHTIGQARCTTFRARVYNESNIDTSFATSVKANCPSAGGDNTLSPLDLATPTTFDNKYYTDLRGQKGLLHSDQQLFSGGSTNSQVTTYSSNQNTFFTDFAAAMVKMGNISPLSGTSGQIRKNCRKAN*

Protein Length: 322

Fln nts: CCCACATCCAATTCAATTCCATTCCATTATCATTCCTTTTTCCTTTCCCGGTAGCAGCTAATTTTTTGGTCATGAAGGCTCTCGTGTGCATTGTTGTGGTGTGCTGTGTATATGCTCTATTAATTACGCTGCGTATGGGCAGCTGACCTCAACTTTTTACAGCAAAGTGTGTCCGACGGCGCTTTCGATAGTGAAAGCCGCAGTGACCAAAGCCGTCAACAATGAGAAACGGATGGGGGCGTCCTTGCTCCGCCTTCACTTCCACGATTGCTTCGTTAATGGCTGCGATGGCTCGATATTGTTGGATGATAACTCAACGTTCACCGGAGAAAAGACTGCAGGCCCAAACGCTAATTCTGTGAGAGGGTTCGACGTAATAGACACAATCAAGACTCAAGTTGAGGCAGCCTGCAGTGGTGTTGTGTCATGTGCCGACATTCTCGCCATTGCTGCTCGCGATTCAGTCGTCCAACTGGGAGGCCCAACATGGACAGTACTTCTGGGAAGGCGAGACTCGACGACTGCGAGTTTAAGCGCCGCAAACAACAACATTCCGTCTCCGGCTTCCAATCTCAGCACCCTCATCTCATCGTTTACAGCCCACGGTCTTTCTACCAAGGACCTCGTTGCACTCTCGGGCGCTCATACAATTGGCCAAGCGCGGTGCACCACATTCAGAGCTCGAGTCTACAACGAATCCAACATTGACACTTCCTTCGCTACGTCGGTGAAGGCAAACTGCCCAAGCGCTGGTGGCGACAACACCCTCTCGCCCTTAGATCTTGCCACGCCTACCACATTTGACAACAAGTATTACACTGATTTGAGAGGCCAAAAGGGACTTCTGCACTCCGATCAGCAACTGTTTAGCGGAGGCTCTACAAATTCTCAAGTCACCACCTACAGCTCTAATCAAAACACCTTCTTTACGGACTTTGCAGCCGCCATGGTGAAAATGGGGAATATTTCTCCTCTGAGTGGTACCAGCGGACAAATCCGCAAGAACTGCAGGAAGGCCAATTAA___GGTTTACCAACATTTTTATTTTTATTTTTCGTTGTAACAAATTTATTGGCAATTGGCTACCGAAAAAACCAATAAACTAAATTGCGATGCGATTGTGCTTAAACG

Fln Alignment:

sp_v1.1_unigene60488___VLCICSINYAAYGQLTSTFYSKVCPTALSIVKAAVTKAVNNEKRMGASLLRLHFHDCFVNGCDGSILLDDNSTFTGEKTAGPNANSVRGFDVIDTIKTQVEAACSGVVSCADILAIAARDSVVQLGGPTWTVLLGRRDSTTXXXXXXXXXXXXXXXXXXTLISSFTAHGLSTKDLVALSGAHTIGQARCTTFRARVYNESNIDTSFATSVKANCPSAGGDNTLSPLDLATPTTFDNKYYTDLRGQKGLLHSDQQLFSGGSTNSQVTTYSSNQNTFFTDFAAAMVKMGNISPLSGTSGQIRKNCRKAN
Q4W2V5_______________VLCISSINNAAHGQLTSTFYNKLCPTALSIVKAAVNKAVNNEKRMGASLLRLHFHDCFVNGCDGSILLDDNSTFTGEKTALPNANSVRGFDVIDTIKTQVEAACSGVVSCADILAIVARDSVVQLGGPTWTVLLGRRDSTTASLSAANNNIPSPASNLSALISSFTAHGLSTKDLVALSGGHTIGQARCTTFRARIYNESNIDTSFATSVKSSCPSAGGDNTLSPLDLATPTTFDNKYYTDLGNRKGLLHSDQQLFSGGSTNSQVTTYSANQNTFFTDFAAAMVKMGNISPLTGTSGQIRKNCRKAN

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
853		66		33	1.0
923	80		20		0.995493
981		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain