SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60481

Length: 245 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene60481
ATTCTTGTGCTTGTTTGCAATCAAATGGTATATGAGTATAATATATCGATAGCACATCATTTTATTATATAAGGTTGGAGTTTACTGTATCTCTTATTTGAGTTTTCTGTGTGTAAATAAAGGCTGAGAAACAGATTGAAGTATACACCAGGCAAGGCTTTTCAGGACTACCAATCTGCATGGCAAAGACACAATATTCCTTTTCACATGACGCTTCATTGAAAGGGGCTCCCACCGGGTTTATA

Ace file of the UniGene sp_v1.1_unigene60481

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	10-formyltetrahydrofolate synthetase n=3 Tax=rosids RepID=B9GLK3_POPTR	-	-	9.0e-14	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	10-formyltetrahydrofolate synthetase	-	-	6.33318e-16	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	copper ion binding	GO:0005507	Molecular Function	6.33318e-16	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	6.33318e-16	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	6.33318e-16	93%
Blast2go	apoplast	GO:0048046	Cellular Component	6.33318e-16	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 50 aas, your sequence is shorter than subject: 81 - 502

Fln protein: SCACLQSNGI*V*YIDSTSFYYIRLEFTVSLI*VFCV*IKAEKQIEVYTRQGFSGLPICMAKTQYSFSHDASLKGAPTGFI

Protein Length: 82

Fln nts: ATTCTTGTGCTTGTTTGCAATCAAATGGTATATGAGTATAATATATCGATAGCACATCATTTTATTATATAAGGTTGGAGTTTACTGTATCTCTTATTTGAGTTTTCTGTGTGTAAATAAAGGCTGAGAAACAGATTGAAGTATACACCAGGCAAGGCTTTTCAGGACTACCAATCTGCATGGCAAAGACACAATATTCCTTTTCACATGACGCTTCATTGAAAGGGGCTCCCACCGGGTTTATA

Fln Alignment:

sp_v1.1_unigene60481___KAEKQIEVYTRQGFSGLPICMAKTQYSFSHDASLKGAPTGFI
C0PPV8_______________QAEKQIEVYTRQGFSGLPICMAKTQYSFSHDASLKGAPTGFI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
99		33		66	0.997459
102	66	33			0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain