SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60444

Length: 572 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene60444
CGTCGTGACCTTGGCTGTCGTGATCTTGGTGACATTGACTTTCTCGTTTCATAGCTGCAGGTAGGCTTCACTGCAAAATAGATAAAGTTGTTGGTGTTCTAGAAACTAACAGGCCGGATGCTAAAAATGCTCTCTATCAAGCAACTATCAAACAAGGAGACTTTTTGTTGAACCGCATTCAGAAACTCTCCAGAGTAATTGACCTTTAAAAATAGTTCAGAAGTGACCCACTTTCCTTGCTGCTAAAGTGCCATTTTGAAATTTCACATTTAAGATGAAGGAAGCATTATCATTCCTTTAAAATTTCAGACTGTATTTCAAAGTTATTAGACTTTGGCATTTAATTGATTGCATTGTAAGTACACTTACGTCTTCCATTTGTATCAGTACACTAGTGGAAGAAGAAGCGTATGAGGCGTCTGAAGAGGAAGCGGAGAAAGATGAGGCAGAGATCTAAGTAGAAGTAGATTAATAGATGAGCATTGGATTGGATGCAGAGGAATGTTATCGTTAATCTAGTGAATGGATTGCTCTGTGCACCAATGAGTCCGTTAGGGTTTCTATTTGTTTTC

Ace file of the UniGene sp_v1.1_unigene60444

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable 26S proteasome regulatory subunit (Fragment) n=11 Tax=Spermatophyta RepID=Q30HZ5_9CONI	-	-	2.0e-23	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	probable 26s proteasome regulatory subunit	-	-	3.55843e-23	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.55843e-23	98%
Blast2go	intracellular part	GO:0044424	Cellular Component	3.55843e-23	98%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT48

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 69 - 386

Fln protein: S*PWLS*SW*H*LSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL*

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCGTGATCTTGGTGACATTGACTTTCTCGTTTCATAGCTGCAGGTAGGCTTCACTGCAAAATAGATAAAGTTGTTGGTGTTCTAGAAACTAACAGGCCGGATGCTAAAAATGCTCTCTATCAAGCAACTATCAAACAAGGAGACTTTTTGTTGAACCGCATTCAGAAACTCTCCAGAGTAATTGACCTTTAA___AAATAGTTCAGAAGTGACCCACTTTCCTTGCTGCTAAAGTGCCATTTTGAAATTTCACATTTAAGATGAAGGAAGCATTATCATTCCTTTAAAATTTCAGACTGTATTTCAAAGTTATTAGACTTTGGCATTTAATTGATTGCATTGTAAGTACACTTACGTCTTCCATTTGTATCAGTACACTAGTGGAAGAAGAAGCGTATGAGGCGTCTGAAGAGGAAGCGGAGAAAGATGAGGCAGAGATCTAAGTAGAAGTAGATTAATAGATGAGCATTGGATTGGATGCAGAGGAATGTTATCGTTAATCTAGTGAATGGATTGCTCTGTGCACCAATGAGTCCGTTAGGGTTTCTATTTGTTTTC

Fln Alignment:

sp_v1.1_unigene60444___LSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL
A9NT48_______________LSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain