SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60421

Length: 1063 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene60421 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF674 domain containing protein	-	-	1.0e-24	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	unknow protein	-	-	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF674	IPR007750	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1F2

Fln msg:

Fln protein: MAAGDQSESKPKPMTITLMVAKKGRKIMYAEAGKDFVDLLFSFLMIPAGAIAKQALVSKGTKGEDQTKTCCIKNLYESVQNLAPSLLKADKEILLDPKVFSTAYTNDTLGIQAPPRPKPEAPPRYFMCSNFASRYGHPHSISTSCGTVACSSCGNSVNREVKFIDKPPEPAKDPAPKGFVKKSANFVITDDLSVIPVNSTATIVQLWNKLDVKEPTELEERNVTVGPNEVIGLLRAAMVSTTALNDVFKAGSKYMTPGDMETTGISLQELLLKLLIEDQKSRSSSKVTV*

Protein Length: 291

Fln nts: ATGGGGGACCTTACTGGAGTATTCACTCTTAACAACATAAGAAAGAGAAGCTCCAGAGAATTGCC_-_ATGGCAGCCGGTGACCAGTCTGAGAGTAAGCCTAAGCCCATGACCATAACACTAATGGTCGCCAAGAAAGGTCGTAAGATAATGTACGCAGAAGCCGGGAAAGATTTTGTGGATCTGCTATTTAGTTTTCTCATGATTCCAGCGGGGGCCATTGCCAAGCAGGCACTGGTCTCCAAAGGGACCAAGGGCGAGGATCAGACAAAGACTTGCTGCATTAAAAATCTGTATGAGAGCGTGCAGAACCTGGCACCCTCGCTTCTGAAAGCCGACAAAGAAATTCTATTAGACCCAAAGGTTTTCTCCACAGCCTACACCAATGACACTTTGGGAATTCAAGCTCCTCCTCGACCTAAACCTGAAGCTCCTCCCAGGTATTTTATGTGCAGTAACTTTGCTTCCCGTTACGGCCACCCACACAGTATTAGCACGAGCTGTGGAACTGTGGCATGTTCCTCCTGCGGCAATTCAGTAAATCGTGAAGTGAAGTTCATCGACAAACCCCCTGAACCTGCCAAGGACCCCGCGCCTAAGGGGTTTGTTAAGAAGAGTGCGAATTTTGTCATCACAGACGACTTGAGCGTAATTCCAGTTAATTCCACTGCCACGATTGTTCAGTTGTGGAATAAACTTGATGTCAAGGAGCCAACGGAATTAGAAGAACGGAATGTTACAGTTGGCCCCAACGAGGTGATAGGTTTGCTCAGAGCTGCTATGGTTTCTACCACTGCTTTAAATGATGTCTTCAAGGCTGGCTCTAAGTATATGACTCCGGGGGATATGGAGACTACTGGAATCTCGCTGCAGGAGCTTCTGCTAAAATTGCTGATTGAAGACCAGAAGTCTCGTAGCAGCAGCAAGGTGACCGTCTGA___CAAATGAAGGAAGCCTAAATAAGCTGAATTACGTAATATACTGAGATATAAATCTTGACGATGGGCACACATTGCCTTCATGTAAATCACTACCATGAAATAAATAAATAAATAAAACGTTATAAGTA

Fln Alignment:

sp_v1.1_unigene60421___MAAGDQSESKPKPMTITLMVAKKGRKIMYAEAGKDFVDLLFSFLMIPAGAIAKQALVSKGTKGEDQTKTCCIKNLYESVQNLAPSLLKADKEILLDPKVFSTAYTNDTLGIQXXXXXXXXXXXRYFMCSNFASRY-GHPHSISTSCGTVACSSCGNSVNREVKFIXXXXXXXXXXXXKGFVKKSANFVITDDLSVIPVNSTATIVQLWNKLDVKEPTELEERNVTVGPNEVIGLLRAAMVSTTALNDVFKAGSK
A9P1F2_______________MAAGDPSESKSKPMTITLMVTKKGRKIMYAEAGKDFVDLLFSFLMIPTGAIAKQALVSKGTKEEDQTKTCCIKNLYDSVQNLSPSLLKADKEILLDPKFFSVTYTNDILRIQSPPRPQPAAPPRYFMCTNFASRYHSHPHSISTECGTVTCSSCGSLVNRELKFVDKPPEPAKDPVPTGYVKKSANFVITDDLSVIPVNSTAAIVQLWNKLDVKEPTELEERNVTVGPNEVIGLLRAAMVSTTALNDVFKAGSK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
697		11		88	0.991528
719		14		85	0.993533
812	14		85		0.993533
837	37		62		1.0
858	28		71		1.0
868			28	71	1.0
869	33		66		1.0
939		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain