SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60397

Length: 1746 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60397

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucan endo-1,3-beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RYW1_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	glucan endo- -beta-glucosidase	-	-	71%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 17	IPR000490	-	71%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	71%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR54

Fln msg: your sequence is shorter than subject: 418 - 435

Fln protein: MGVSLMGRGSLGMSCLWALVSLSGLALSNALSSTSATTTGINYGQVADDLPPPELVVGLLQTSNIGRIKLYTVNATVLKAFANTGIELIVGVPNEIIGNLTDPNSATEWVNENIQAYLPATKIIGIAVGNEVYTSDTQSMANLVPAMQNIHSALVSIGADTDIIISTPHSFGVLVTSYPPSAGSFQPGLESLMEQLLALLSQIGSPFFINAYPYFTYEDQPSQIPLDYVLLEPNASAVVDQNNNVVYKNMLYAQVDAVYSALSALGYPNLEVIVTETGWPSNGDADEAGATLQNAQAYNGNLLQLLAQNKGTPLRPNVVLQAYLFALFNEDLKPGPTSERNYGLFQPNGIAVYDVGLTGSLSIGNKKAVSVGSPTASADTPYYSISFAKETCTDISFYNHLQVLALSSFLVLQLFLP*

Protein Length: 419

Fln nts: CTTGCCCAGCTTTaACCCTTTCAGTTGCTGTCCAGTGGAGGACACATTTATCACTAACGCTGTGCAATATTGAGTACCTGCAAAGAGCATATGTGCTATCACAGCACCAGCAAGACCCACTCGATTAATTTCTCGCAATTTTCTGCATGCGAGAAAATTTGGGCACGTAGAGGGTGCTGCC_-_ATGGGAGTTTCACTAATGGGCAGAGGAAGTCTAGGAATGAGCTGCTTGTGGGCTCTGGTTTCGCTGTCTGGACTGGCTCTTTCAAATGCTCTGTCCAGCACAAGTGCCACCACAACAGGAATCAACTATGGACAAGTTGCAGACGACTTGCCACCTCCGGAACTAGTAGTGGGTCTTTTGCAGACCAGCAATATCGGCAGAATAAAACTCTACACTGTAAATGCGACAGTCCTGAAAGCATTTGCAAACACTGGTATAGAATTGATTGTTGGAGTGCCAAATGAAATCATTGGCAACTTGACAGATCCAAACTCAGCCACTGAATGGGTCAATGAAAACATTCAAGCTTACTTACCAGCCACAAAGATCATAGGTATAGCAGTAGGGAACGAGGTTTACACAAGTGACACACAGTCAATGGCAAACCTAGTTCCTGCAATGCAAAACATTCATTCGGCCCTAGTCAGCATTGGTGCGGACACGGATATTATAATTAGCACTCCCCATTCTTTTGGTGTACTTGTGACTTCATATCCACCATCTGCTGGTTCATTTCAACCAGGACTGGAGAGCCTAATGGAACAGCTTTTGGCTCTCCTGTCTCAGATTGGTTCTCCTTTCTTCATAAATGCTTATCCATACTTTACATACGAAGATCAGCCAAGCCAGATACCCCTGGATTATGTACTACTCGAACCAAATGCAAGTGCTGTCGTTGACCAGAACAATAATGTTGTCTATAAGAACATGTTATATGCACAGGTTGATGCAGTTTATTCTGCACTATCTGCACTAGGATATCCTAATCTAGAAGTCATAGTCACTGAAACTGGATGGCCTTCAAACGGTGATGCCGATGAAGCAGGTGCAACTCTTCAGAATGCACAGGCTTATAATGGGAATTTGCTTCAGCTGCTGGCTCAGAACAAGGGGACTCCTTTGAGGCCCAATGTTGTTTTGCAGGCTTACCTATTTGCATTATTCAATGAAGACTTGAAGCCTGGCCCAACCTCCGAGAGGAATTATGGGCTATTTCAGCCAAATGGAATTGcAGTTTACGATGTGGGATTAACTGGATCACTGTCTATTGGTAATAAAAAAGCCGTGTCAGTTGGTTCTCCCACTGCTTCCGCTGATACTCCATACTACAGTATTTCTTTTGCCAAGGAAACTTGTACTGATATCTCCTTCTACAATCATCTCCAGGTTTTGGCCCTCTCTTCTTTCTTGGTTCTTCAACTGTTTCTTCCATGA___TTGAAATTTGAAACCATGGAAGTCCTGTAGAAATTTGCATGTTCCTTTCATTTCATTCAACATCAGCTAAAACGACGAAACTCAGAGGAAATTTTGTGGTGGATAACTAAATATATTCACTGCAGACAGTGAAGGAGCAAGCATCTGCCTTTACATCACATGCTGATAACTTGAGCATCCTCATTTATTAACGAGGAGCTGTTGTCAGACACATATCAGTGAGTCCCATAATTGCAATAATGCAGACATCAGCATGGCCCTGGCTTTACATTACGGATTTTATTTGACCTTTTTATATATCGAGTTTAAAC

Fln Alignment:

sp_v1.1_unigene60397___MGVSLMGRGSLGMSCXXXXXXXXXXXXXXXXXXXXXXXXGINYGQVADDLPPPELVVGLLQTSNIGRIKLYTVNATVLKAFANTGIELIVGVPNEIIGNLTDPNSATEWVNENIQAYLPATKIIGIAVGNEVYT-SDTQSMANLVPAMQNIHSALVSIGADTDIIISTPHSFGVLVTSYPPSAGSFQPGXXXXXXXXXXXXXXIGSPFFINAYPYFTYEDQPSQIPLDYVLLEPNASAVVDQNNNVVYKNMLYAQVDAVYSALSALGYPNLEVIVTETGWPSNGDADEAGATLQNAQAYNGNLLQLLAQNKGTPLRPNVVLQAYLFALFNEDLKPGPTSERNYGLFQPNGIAVYDVGLTGSLSIGNKK-------AVSVGS-----------PTASADTPYYSISFAKETCTDISFYNHLQVLALSSFLVLQLFLP
B8LR54_______________MGTSVMGRGGLKMSCLWVLVLLSGLALSNAQSKISSSTTGINYGQVADNLASPELVVGLLQTNSINKVKLYSVNETVLKAFANTGIELIVGMGNEDVGNMTDPTKATEWVNENIKAYLPATKIRGIAVGNEVYTGTDTQLMANLVPAMKNIHSALVSIGADTNIKITTPHSLAVLGNSFPPSAGSFASDLKSLMKPLLDLLSQIGSPFFINAYPYFAYKGDPSQISLNYVLFEPN-SGVVDPNNNIRYNNMLYAQVDAVYSALSALGYTNIEVTVSETGWPSKGDANEAGATLQNAQSYNGNLLQLLAQNQGTPLRPKLVLQAYLFALFNEDMKPGPASERNYGLFKPDGTAVYNLGLTGTLSTGSSSTGSSSTGSTSTGSFSTGSPPPAIYPNSPTDSSYSYYSSAKETCSVISFYNHLQLLCLSTFLVVLLFLP

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1241	40	60			1.0
1290	66		33		0.997452
1316		66	33		0.997452
1427	66			33	0.997452
1471		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain