SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60317

Length: 564 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene60317
CGTCGTGACCTTGGCTGTCACTCAATTTTCTTTTCGATCTCTCGACCTTTTATAGATTTGATACGTGGCTAACTTAGAATTGATTGTATGTAGATATGAGGTCGGGTAGCTTTGAATTGAATGTCTATTAAATCCTTTCGGAGAAGCCTATAGAGATTTGCTATGTGGACTACTTGGATTTGATTGTCTTACAGATCTGCTATGTGGGTAGTTTGGAATTGTTTGTCTGACGAATTCCTTTAAGAGAAGCCCCTGTACGTTAATTGTGGGTATCTTCCTTGTAAATCCTAACAGAGAAGACCAGAAGAGACGAATTGAACATCCAGGGTTTTCTTTGATTGATATATAACCACTGTATAGTTAGGCAGTCATGGGTTCAAACAAGGGGCAGGGTGGAATTCAGTTGTTACTGGCTGCAGAGTAGGAGGCACAACACATTGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGACCAAGCTGAGAGGGAAATTGCTTCTTACCGGGGCACAGAGGGAAACTGAATTTCGAAGGAAGGTCGCAGAGACCA

Ace file of the UniGene sp_v1.1_unigene60317

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	V-type proton ATPase subunit G n=1 Tax=Citrus limon RepID=VATG_CITLI	-	-	2.0e-13	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	vacuolar atp synthase subunit g	-	-	1.09361e-18	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	1.09361e-18	89%
Blast2go	vacuole	GO:0005773	Cellular Component	1.09361e-18	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNM3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 45 aas, your sequence is shorter than subject: 56 - 110

Fln protein: MGSNKGQGGIQLLLAAE*EAQHIVASARAAKMARLKQAKDQAEREIASYRGTEGN*

Protein Length: 57

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCTTTTCGATCTCTCGACCTTTTATAGATTTGATACGTGGCTAACTTAGAATTGATTGTATGTAGATATGAGGTCGGGTAGCTTTGAATTGAATGTCTATTAAATCCTTTCGGAGAAGCCTATAGAGATTTGCTATGTGGACTACTTGGATTTGATTGTCTTACAGATCTGCTATGTGGGTAGTTTGGAATTGTTTGTCTGACGAATTCCTTTAAGAGAAGCCCCTGTACGTTAATTGTGGGTATCTTCCTTGTAAATCCTAACAGAGAAGACCAGAAGAGACGAATTGAACATCCAGGGTTTTCTTTGATTGATATATAACCACTGTATAGTTAGGCAGTC_-_ATGGGTTCAAACAAGGGGCAGGGTGGAATTCAGTTGTTACTGGCTGCAGAGTAGGAGGCACAACACATTGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGACCAAGCTGAGAGGGAAATTGCTTCTTACCGGGGCACAGAGGGAAACTGAATTTCGAAGGAAGGTCGCAGAGACCA

Fln Alignment:

sp_v1.1_unigene60317___MGSNKGQGGIQLLLAAE*EAQHIVASARAAKMARLKQAKDQAEREIASYR
B8LNM3_______________MDSNKGQGGIQLLLAAEQEAQHIVASARSAKMARLKQAKDEAEREIASYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain