SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60308

Length: 470 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60308

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	gpm447; LOC100282946; K02983 small subunit ribosomal protein S30e	-	-	3.0e-20	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	40s ribosomal protein s30	-	-	3.88347e-21	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	3.88347e-21	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	3.88347e-21	95%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
38			80	20	0.995505
39		20	80		0.995505
40			80	20	0.995505
53	16			83	0.994519
55			16	83	0.994513
56	83		16		0.994513
57			16	83	0.994513
58			16	83	0.994513
74	14	85			0.993539
76		85	14		0.993534
78	85		14		0.993534
84	80		20		0.999996
87		90	10		0.903229
98		76	23		1.0
100		76	23		1.0
144	75		25		1.0
146			87	12	1.0
147	84		3	12	1.0
148	12	71	3		1.0
152		28		71	1.0
153	71		28		1.0
154		28		71	1.0
155	28			71	1.0
410	75		25		0.996483

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain