SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60283

Length: 1156 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene60283 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NYV8_PICSI	-	-	96%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	proteasome subunit beta type 7-a precursor	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	0.0	92%
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase T1A, proteasome beta-subunit	IPR000243	-	92%
Blast2go	Proteasome, subunit alpha/beta	IPR001353	-	92%
Blast2go	Proteasome, beta-type subunit, conserved site	IPR016050	-	92%
Blast2go	Proteasome B-type subunit	IPR023333	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg:

Fln protein: MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGSGSNVDVCVITKGQREYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE*

Protein Length: 275

Fln nts: ATGGGAAAGGAAAAGTAAAGGTTGCTCTCTGAACAATTTTCAGCTCGCCACCGAGAAAAGCCGAAAACACAAATACCAAGTGACGGACTCCTCTTCCCTTTGCCGCGATTTAGGGTTTGAAAGGTCTCAAACTTCGACGGAATTTCACTGATTTCGGGAGTTTGCGGGGTATTATTCTGCGTTTTACAGGGTTTCTGTTCCCATCCGCGAAGCC_-_ATGGCAAATACTACGATCGAACTCCCCCCTAAAGGCGGCTTCAGCTTTGATTTGTGTCGGAGAAATGAAATGCTTGCGAAGAAAGGTGTTCAGCCTCCTTCGTTCCGCAAGACAGGAACAACCATTGTAGGCCTCGTTTTCAAGGACGGAGTCATTCTTGGAGCAGACACTCGTGCAACAGAAGGTCCAATTGTATGTGATAAGAACTGTGAAAAAATACATTATATGGCACCAAACATATACTGCTGTGGAGCTGGAACTGCTGCTGATACAGAAGCAGTGACAGATATGGTTAGCTCCCAACTAGAATTGCACCGCTATGCAACTGGTCGAGAATCGAGGGTTGTCACTGCTCTTACCCTTCTCAAATCTCATCTTTACAGTTACCAAGGCCATGTGAGTGCAGCCCTGGTACTTGGTGGTGTGGATTGTACAGGACCACATTTGCATACAATTTATCCCCATGGATCAACTGACACTTTACCTTTTGCTACAATGGGTTCCGGTTCTCTTGCTGCTATGGCTATGTTTGAATCAAGATACAAAGAAGGCATGACAAGAGAGGAGGGAATAAAGCTGGTTTGTGAAGCTATCTGTTCTGGAATCTTCAATGATCTGGGAAGTGGAAGTAATGTTGACGTATGTGTGATAACAAAGGGTCAAAGAGAATATTTGCGGAATTATGCGCTTCCAAATCCACGTACCTATGTTAGTTCAAAAGGTTATTCATTTGCCAAGGGACATACAGAGGTTCTTTCAACGAAAATAATCCCTTTGAAAGAGCATGTGCAAATTATTGAAGGGGATGCTATGGAAGAGTGA___GTAATGCAGATGATAAATTCTGGTATTTCTTGGGATAGTTATTTCTCCTATAAATGAATCCTTCACAGTCACTGAACATAATTTGGAAACCATTCCATTCAATTAACGAATCGGGACTCG

Fln Alignment:

sp_v1.1_unigene60283___MANTTIELPPKGGFSFDLCRRNEMLAKKGVQPPSFRKTGTTIVGLVFKDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYKEGMTREEGIKLVCEAICSGIFNDLGSGSNVDVCVITKGQREYLRNYALPNPRTYVSSKGYSFAKGHTEVLSTKIIPLKEHVQIIEGDAMEE
A9NYV8_______________MANTAIELPPKGGFSFDLCRRNEMLAKKGVQSPSFRKTGTTIVGLVFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLELHRYATGRESRVVTALTLLKSHLYSYQGHVSAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESRYREGMTREEGIKLVCQAICSGIFNDLGSGSNVDVCVITKGQKEYLRNYELPNPRTYVSSKGYSFAKGHTEVLSTKITPLKEHVKIIEGDAMEE

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
540	33	66			0.997452
650	88		11		0.923564
812		87		12	0.992554
817	12	87			0.992554
819	12			87	0.992554
820	87		12		0.992554
822	90	10			0.90298
824	10			90	0.90298
828		10		90	0.90298
829	10		90		0.90298
830		10		90	0.90298
831			10	90	0.90298
832	10	90			0.90298
865		11		88	0.923564
904		83	16		0.994512
912	20		80		0.995497
913	25	75			0.996483
914		75	25		0.996483
915			33	66	0.997476
917		33		66	0.997471
919		33	66		0.997476
921	33		66		0.997476
922		33	66		0.997476
991	66			33	0.997452
1047	80	20			0.995493
1048	80	20			0.995493
1051	20	80			0.995493
1098			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain