SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60282

Length: 1233 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene60282

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein, putative	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	95%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	95%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNG9

Fln msg: your sequence is shorter than subject: 192 - 288

Fln protein: RRDLGCHSYVSDIDQQVTEEQLAALFINCGQVVDCRVCGDPNSVLRFAFVEFTDEESARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQADVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTPVRPRNPRSLMH*

Protein Length: 193

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAACTTGCAGCTCTTTTTATTAATTGTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCCTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGGACCATGTTGGGATACTATCCCGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCAGTAAACCCAACATTTCTTCCGAGGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGCACAAATATTGACAAGAAGGTTTCCCAAGCGGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGAGGTTTCTCGTTTGAGACTCTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGAGAGTGCTATTGCTGCTTTAAACTGCAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCGAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGA___ACGTGGCTATTTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATCGGAGAGTAAAACCTAGCTTTTGGTTTTAAAGTGGATGTCCATCAGGATGGCAGTATCATTTGATTATTGTACAATAAACATGAAAGTATCTATTGGGTCAGGCAATACAGTTCCTTTCAGAAACTCCTGGCATATTCTACGGGCATCATATTTATCTGCATACACCGTACAGAGTTCTTTGAAACTTTGAGTATGTTAGCTGCTTAGAAAGTAGCACGGCAGTTGCAGATGAAATCCTTGATTTGTCAACGAACAGTGCGTATTTCTTTTGGTAGGAATTTGACTCGCTGTGTCAATTTTAGAAAGCAAGGATGACATCATTTTGTTCCTGTAGATTTGGCTGTAAAAATTGGTTGCTCATCCACTTGTGATTTAAGTACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGATTTCCATCCTGTAAGCCCTAAGGCTTTACTATTGATCCAATAATGAACTAGCCTGATGACGACTTGACAATCTGTCATGTTTAGGAAATTCTTCAAAGGCTTGTTTATTTGAAGCTTTATTTTCTGGAAAAGGTTGGAACTTGTCTAG

Fln Alignment:

sp_v1.1_unigene60282___YVSDIDQQVTEEQLAALFINCGQVVDCRVCGDPNSVLRFAFVEFTDEESARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQADVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTPVRPRNPRSLMH
A9NNG9_______________YVCDIDHQVTEEQLAALFINCGQVIDCRICGDPNSVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNCSGAIVGSLPIRVSPSKTPVRPRIPHPTMH

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1196	85			14	0.993533
1205	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain