SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60252

Length: 478 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene60252
ATGGGGCACAGATTTTAGCTACTTCAGTAGGCGTTCCAACAATTCCAGTGAGGGATCACTATAGTTTTGATTTCGCCTTGGCTGGTAGAAATGGCAGTGTTGTCATGGCTCCGGCAAATGAATCAGACCCAAGCCAGCAATGGATCATGGATACTTCATGGAGTGTGAAGGCCAAGGATGATGAAGGATTTCCTGCATTTGCCCTTGTAAACAAAGCTACAGGCCAGGCATTGAGGCATGGACGTGCAGAGAAGGATAAGGTCACCTTGGGTCCTTACCACCCAGATGATTTGAATGAGGCTGTGCTTTTCACCCAAAGTGCCGATGTGGGTAAGGGTTACCAGTGTATCCGACCTGTCCACAACACACATCTTAATCTAGATGCTAGCGCTGGAGATGATAAGCATCATGTGGCGTTGACACAACAGTGTTGGGAGGAGGAACCGCAAGACCGACCACCGATGGATTGGTAGTAGAA

Ace file of the UniGene sp_v1.1_unigene60252

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	stress responsive protein	-	-	9.0e-31	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	stress responsive protein	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ricin B-related lectin	IPR008997	-	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTE9

Fln msg: your sequence is shorter than subject: 157 - 182

Fln protein: GAQILATSVGVPTIPVRDHYSFDFALAGRNGSVVMAPANESDPSQQWIMDTSWSVKAKDDEGFPAFALVNKATGQALRHGRAEKDKVTLGPYHPDDLNEAVLFTQSADVGKGYQCIRPVHNTHLNLDASAGDDKHHVALTQQCWEEEPQDRPPMDW*

Protein Length: 158

Fln nts: ATGGGGCACAGATTTTAGCTACTTCAGTAGGCGTTCCAACAATTCCAGTGAGGGATCACTATAGTTTTGATTTCGCCTTGGCTGGTAGAAATGGCAGTGTTGTCATGGCTCCGGCAAATGAATCAGACCCAAGCCAGCAATGGATCATGGATACTTCATGGAGTGTGAAGGCCAAGGATGATGAAGGATTTCCTGCATTTGCCCTTGTAAACAAAGCTACAGGCCAGGCATTGAGGCATGGACGTGCAGAGAAGGATAAGGTCACCTTGGGTCCTTACCACCCAGATGATTTGAATGAGGCTGTGCTTTTCACCCAAAGTGCCGATGTGGGTAAGGGTTACCAGTGTATCCGACCTGTCCACAACACACATCTTAATCTAGATGCTAGCGCTGGAGATGATAAGCATCATGTGGCGTTGACACAACAGTGTTGGGAGGAGGAACCGCAAGACCGACCACCGATGGATTGGTAG___TAGAA

Fln Alignment:

sp_v1.1_unigene60252___DFALAGRNGSVVMAPANESDPSQQWIMDTSWSVKAKDDEGFPAFALVNKATGQALRHGRAEKDKVTLGPYHPDDLNEAVLFTQSADVGKGYQCIRPVHNTHLNLDASAGDDKHHVALTQ
A9NTE9_______________DFLLASRNESVVMVPANESDPSQQWIMDTSWSVKAKDDAGFPAFALVNKATGQALRHGRSEKDKVTLGPYHPDDLNEAVLFTQSADVGKGYQCIRPVNNTHLNLDASAGDDKHHVALSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain