SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60224

Length: 433 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene60224
ACACGTCTCGGCGGGCGACGGTCGCATAGGAAAGCACAGAAAGCATCCTGGAGGCCGCGGAAATGCTGGAGGGCAGCATCACCACAGGATCCTGTTTGACAAGTACCACCCAGGATACTTCGGAAAGGTGGGAATGAGGCACTTCCACAAGACGAAGAACCAGTTCCACTGCCCCATCGTCAACCTGGACAAGATCTGGTCGCTCGTCGGAGAGGAGGCTCGGGAATCAGCCGCCAAGGACAGCAAGAAGGCCGCGGTCATTGATGTGACCAAGTTCGGCATCTTCAAGGTGCTGGGCAAGGGCCAGCTGCCGGAGCAGCCGCTGCTGGTGAAGGCCAAGTTCGTGTCCAAGCTGGCAGAGAAGAAGATCAAGGAGGTCGGCGGAGCTGTGGAGCTCGTAGCTTAGGGCTTTGTAATCATATTGGGCTGAAAC

Ace file of the UniGene sp_v1.1_unigene60224

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein L27a n=2 Tax=Chlamydomonadales RepID=A8I2T0_CHLRE	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	protein	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L15, conserved site	IPR001196	-	0.0	85%
Blast2go	Ribosomal protein L18e/L15P	IPR021131	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY0

Fln msg: atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning,

Fln protein: HVSAGDGRIGKHRKHPGGRGNAGGQHHHRILFDKYHPGYFGKVGMRHFHKTKNQFHCPIVNLDKIWSLVGEEARESAAKDSKKAAVIDVTKFGIFKVLGKGQLPEQPLLVKAKFVSKLAEKKIKEVGGAVELVA*

Protein Length: 136

Fln nts: ACACGTCTCGGCGGGCGACGGTCGCATAGGAAAGCACAGAAAGCATCCTGGAGGCCGCGGAAATGCTGGAGGGCAGCATCACCACAGGATCCTGTTTGACAAGTACCACCCAGGATACTTCGGAAAGGTGGGAATGAGGCACTTCCACAAGACGAAGAACCAGTTCCACTGCCCCATCGTCAACCTGGACAAGATCTGGTCGCTCGTCGGAGAGGAGGCTCGGGAATCAGCCGCCAAGGACAGCAAGAAGGCCGCGGTCATTGATGTGACCAAGTTCGGCATCTTCAAGGTGCTGGGCAAGGGCCAGCTGCCGGAGCAGCCGCTGCTGGTGAAGGCCAAGTTCGTGTCCAAGCTGGCAGAGAAGAAGATCAAGGAGGTCGGCGGAGCTGTGGAGCTCGTAGCTTAG___GGCTTTGTAATCATATTGGGCTGAAAC

Fln Alignment:

sp_v1.1_unigene60224___HVSAGDGRIGKHRKHPGGRGNAGGQHHHRILFDKYHPGYFGKVGMRHFHKTKNQFHCPIVNLDKIWSLVGEEARESAAKDSKKAAVIDVTKFGIFKVLGKGQLPEQPLLVKAKFVSKLAEKKIKEVGGAVELVA
A9NWY0_______________HVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRHFHKLRNHYHCPIVNIEKLWSLVPEDVKAKATPDS--VPLIDVTQFGFFKVLGKGELPSQPIVVKAKLISKLAEKKIKEAGGAVMLTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain