SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60198

Length: 346 nt

UniGene Fasta

>sp_v1.1_unigene60198
AGTCTCTGGTGATGATGTAGTCGCAATAAAGAGTGGGTGGGATGAATACGGAATTTCCTTTAACATGCCCACCTAACATATTGTCATCCGTCGTCTTGTTGGCATCTCACCCACAAGTGCAATAATTGCACTAGGTCGTGACTTGTCTGTGACTTCAAGATGTTCGAGCAGAAGATATCCATGCCATCAATTCAGAAGCAGGAATAAGAATTAAGACAGTCCCGGGAAGAGGTGCGTTTGTGAGAGATATATTTGTGAATTGGATGACTATGGTTAATATGAGATGGGCGTTCGCAATGACAGGTTCTTATGGTTCGCGTCCACACCCTGATGACAAATATGATCC

Ace file of the UniGene sp_v1.1_unigene60198

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polygalacturonase, putative (EC:3.2.1.15)	-	-	4.0e-32	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	8.49888e-42	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	8.49888e-42	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: Separated hits, possible frame ERROR between 148 and 153, Distance to subject end: 108 aas, your sequence is shorter than subject: 115 - 472

Fln protein: VSGDDVVAIKSGWDEYGISFNMPT*HIVIRRLVGISPTSAIIALGRDLxxxLQDVRAEDIHAINSEAGIRIKTVPGRGAFVRDIFVNWMTMVNMRWAFAMTGSYGSRPHPDDKYD

Protein Length: 116

Fln nts: AGTCTCTGGTGATGATGTAGTCGCAATAAAGAGTGGGTGGGATGAATACGGAATTTCCTTTAACATGCCCACCTAACATATTGTCATCCGTCGTCTTGTTGGCATCTCACCCACAAGTGCAATAATTGCACTAGGTCGTGACTTGTCxxxxxxACTTCAAGATGTTCGAGCAGAAGATATCCATGCCATCAATTCAGAAGCAGGAATAAGAATTAAGACAGTCCCGGGAAGAGGTGCGTTTGTGAGAGATATATTTGTGAATTGGATGACTATGGTTAATATGAGATGGGCGTTCGCAATGACAGGTTCTTATGGTTCGCGTCCACACCCTGATGACAAATATGATCC

Fln Alignment:

sp_v1.1_unigene60198___VSGDDVVAIKSGWDEYGISFNMPT*HIVIRRLVGISPTSAIIALGRDLSxxLQDVRAEDIHAINSEAGIRIKTVPGRGAFVRDIFVNWMTMVNMRWAFAMTGSYGSRPHPDDKYD
B8LQW0_______________VSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAIIALGSEMSxxIQDVRAEDIQAINSETGIRIKTSPGRGGFVKDIFVNRMTMVNMKWAFTMTGSYGS--HPDNKYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain