SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene60152

Length: 382 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene60152
CGCCACCAGGGGATCCACTGCTATTACCATCTCAAACAGTTATTTCACTCAACACAATGAGGTGATGTTGTTGGGTCACCATGATAACTACACTGGCGATGTCAGGATGCAAGTGACGGTTGCATTCAACCATTTTGGCGAAGGTCTTGTGCAGCGAATGCCCAGGTGCAGGCACGGATACTTCCATGTGGTGAACAATGACTACAGTGAATGGGGAATGTATGCAATCGGTGGGAGTGCAAACCCCACAATCAACAGCCAAGGAAATAGATTCATGGCATCTGCAAATCCTTCTGCGAAAGAGGTAACAAAGCGGATAAACCAAAACAGTGACGAATGGAAGAGCTGGAACTGGAGATCGGAAGGAGATATGATGCTGAAC

Ace file of the UniGene sp_v1.1_unigene60152

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pectate lyase family protein; K01728 pectate lyase [EC:4.2.2.2]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	pectate lyase	-	-	86%

Source	ECs	Term	Type	e value	Identity
AutoFact	Pectate lyase.	EC:4.2.2.2	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Pentose and glucuronate interconversions	00040		0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	Pectate lyase/Amb allergen	IPR002022	-	86%
Blast2go	Pectin lyase fold/virulence factor	IPR011050	-	86%
Blast2go	Pectin lyase fold	IPR012334	-	86%
Blast2go	AmbAllergen	IPR018082	-	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQH9

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 127 - 429

Fln protein: ATRGSTAITISNSYFTQHNEVMLLGHHDNYTGDVRMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYSEWGMYAIGGSANPTINSQGNRFMASANPSAKEVTKRINQNSDEWKSWNWRSEGDMMLN

Protein Length: 128

Fln nts: CGCCACCAGGGGATCCACTGCTATTACCATCTCAAACAGTTATTTCACTCAACACAATGAGGTGATGTTGTTGGGTCACCATGATAACTACACTGGCGATGTCAGGATGCAAGTGACGGTTGCATTCAACCATTTTGGCGAAGGTCTTGTGCAGCGAATGCCCAGGTGCAGGCACGGATACTTCCATGTGGTGAACAATGACTACAGTGAATGGGGAATGTATGCAATCGGTGGGAGTGCAAACCCCACAATCAACAGCCAAGGAAATAGATTCATGGCATCTGCAAATCCTTCTGCGAAAGAGGTAACAAAGCGGATAAACCAAAACAGTGACGAATGGAAGAGCTGGAACTGGAGATCGGAAGGAGATATGATGCTGAAC

Fln Alignment:

sp_v1.1_unigene60152___ATRGSTAITISNSYFTQHNEVMLLGHHDNYTGDVRMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYSEWGMYAIGGSANPTINSQGNRFMASANPSAKEVTKRINQNSDEWKSWNWRSEGDMMLN
B8LQH9_______________AIRGSTAITISNSYFTHHNEVMLLGHHDNYTADVHMQVTIAFNHFGEDLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPENRWAKEVTKRVNENKDEWKKWNWRSEGDMMLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain