SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene59997

Length: 731 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene59997

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein n=3 Tax=Andropogoneae RepID=B6TCR8_MAIZE	-	-	1.0e-30	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	protein binding protein	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	75%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	75%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	75%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
137	87		12		0.992554
139	87		12		0.992555
164			11	88	0.92373
167			11	88	0.923834
169			11	88	0.923834
170	11		88		0.92373
175			12	87	0.992554
178		87	12		0.992554
180	87	12			0.992554
182	87	12			0.992554
285	86		13		0.999973
288	86		13		0.999973
289	86			13	0.999973
290			13	86	0.999973
298	86		13		0.999973
300	86	13			0.999973
302			13	86	0.999973
303			86	13	0.999973
511	20			80	0.995496
512	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain